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author bgruening
date Mon, 07 Oct 2013 15:34:32 -0400
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<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable name="PRINSEQ_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
    </set_environment>
    <package name="prinseq_perl_dependencies" version="0.20.3">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.1.0/bowtie2-2.1.0-source.zip</action>
                <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR</action>
                <action type="shell_command">make</action>
                <action type="shell_command">make install</action>

                <action type="download_by_url">http://search.cpan.org/CPAN/authors/id/M/MA/MAKAMAKA/JSON-2.59.tar.gz</action>
                <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR</action>
                <action type="shell_command">make</action>
                <action type="shell_command">make install</action>

                <action type="set_environment">
                    <environment_variable name="PERL5LIB" action="prepend_to">$INSTALL_DIR/lib/perl5/site_perl</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>

<!--fisher_exact-->