Mercurial > repos > bgruening > precommit_test
changeset 16:bd5da1454a9b draft
Uploaded
author | bgruening |
---|---|
date | Sat, 02 Nov 2013 20:44:31 -0400 |
parents | f7b208c7a3a1 |
children | 9ce50b97cd17 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 33 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Sat Nov 02 20:44:31 2013 -0400 @@ -0,0 +1,33 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="perl" version="5.18.1"> + <repository changeset_revision="091a97f8c585" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="bioperl" version="1.6.922"> + <install version="1.0"> + <actions> + <!-- install perl --> + <!--<action type="download_by_url">http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.922.tar.gz</action>--> + <!-- populate the environment variables from the dependend repos --> + <action type="set_environment_for_install"> + <repository changeset_revision="091a97f8c585" name="package_perl_5_18" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="perl" version="5.18.1" /> + </repository> + </action> + + <action type="shell_command">cpanm --local-lib=$INSTALL_DIR XML::Parser</action> + <action type="shell_command">cpanm --local-lib=$INSTALL_DIR Bundle::BioPerl</action> + + + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5</environment_variable> + <environment_variable action="set_to" name="PERL_ROOT_DIR">$INSTALL_DIR/lib</environment_variable> + </action> + </actions> + </install> + <readme> + Bundle::BioPerl + </readme> + </package> +</tool_dependency>