Mercurial > repos > bgruening > precommit_test
changeset 21:81d711564625 draft default tip
Uploaded
author | bgruening |
---|---|
date | Tue, 19 Nov 2013 18:55:27 -0500 |
parents | 2ecce0ee7183 |
children | |
files | tool_dependencies.xml |
diffstat | 1 files changed, 19 insertions(+), 6 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue Nov 05 13:56:08 2013 -0500 +++ b/tool_dependencies.xml Tue Nov 19 18:55:27 2013 -0500 @@ -1,21 +1,30 @@ <?xml version="1.0"?> <tool_dependency> <package name="libgd" version="2.1.0"> - <repository changeset_revision="dcbab64c0429" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="55e3d764c6c2" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="perl" version="5.18.1"> - <repository changeset_revision="978287122b91" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="expat" version="2.1.0"> <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> + <package name="bzlib" version="1.0.6"> + <repository changeset_revision="04e1967b1722" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="libpng" version="1.2.5"> + <repository changeset_revision="a80a3062f066" name="package_libpng_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> <package name="trans_proteomic_pipeline" version="4.6.3"> <install version="1.0"> <actions> <action type="setup_perl_environment"> - <repository changeset_revision="978287122b91" name="package_perl_5_18" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="perl" version="5.18.1" /> </repository> + <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="expat" version="2.1.0" /> + </repository> <!-- allow downloading and installing an Perl package from cpan.org--> <package>http://search.cpan.org/CPAN/authors/id/T/TO/TODDR/XML-Parser-2.41.tar.gz</package> @@ -23,16 +32,20 @@ <package>XML::Parser</package> --> <package>http://search.cpan.org/CPAN/authors/id/L/LD/LDS/CGI.pm-3.43.tar.gz</package> - - </action> <action type="change_directory">..</action> <action type="download_file">https://downloads.sourceforge.net/project/sashimi/Trans-Proteomic%20Pipeline%20%28TPP%29/TPP%20v4.6%20%28occupy%29%20rev%203/TPP-4.6.3.tgz</action> <!-- populate the environment variables from the dependend repos --> <action type="set_environment_for_install"> - <repository changeset_revision="dcbab64c0429" name="package_libgd_2_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="55e3d764c6c2" name="package_libgd_2_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="libgd" version="2.1.0" /> </repository> + <repository changeset_revision="a80a3062f066" name="package_libpng_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="libpng" version="1.2.5" /> + </repository> + <repository changeset_revision="04e1967b1722" name="package_bzlib_1_0" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="bzlib" version="1.0.6" /> + </repository> </action> <action type="shell_command">tar xfz TPP-4.6.3.tgz</action> <!-- doanload patched version of htmldoc to prevent a TPP crashed during compilation -->