comparison tool_dependencies.xml @ 9:f126b49e93e7 draft

Uploaded

8:fbc64ecd5295

<?xml version="1.0"?>
<tool_dependency>
     <package name="blat" version="1.0.0">
         <install version="1.0">
             <actions>
                 <action type="download_by_url">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/blat</action>
                 <action type="move_file">
                     <source>blat</source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
                 <action type="shell_command">chmod +x $INSTALL_DIR/bin/blat</action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>
             </actions>
         </install>
         <readme>
The BLAT binary for linux x86_64 is retrieved from UCSC.
         </readme>
     </package>
</tool_dependency>

9:f126b49e93e7

<?xml version="1.0"?>
<tool_dependency>
    <package name="fastqc_dist_0_10_1_dependency" version="0.10.1">
        <repository changeset_revision="7d57dba74532" name="upload_testing" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
</tool_dependency>