Mercurial > repos > bgruening > plotly_parallel_coordinates_plot

annotate paracords_plot.xml @ 0:2da0fddf2bdb draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
author bgruening
date Sun, 23 Sep 2018 07:51:58 -0400
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2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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1 <tool id="plotly_parallel_coordinates_plot" name="Parallel Coordinates Plot" version="0.1">
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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2 <description>of tabular data</description>
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3 <requirements>
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4 <requirement type="package" version="3.6">python</requirement>
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5 <requirement type="package" version="0.22.0">pandas</requirement>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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6 <requirement type="package" version="3.1.1">plotly</requirement>
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7 </requirements>
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8 <version_command>echo $version</version_command>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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9 <command detect_errors="aggressive"><![CDATA[
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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10 python '$__tool_directory__/paracords_plot.py'
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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11 -i '$infile'
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12 -d '$col_dimensions'
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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13 -c '$col_color'
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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14 ]]>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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15 </command>
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16 <inputs>
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17 <param name="infile" type="data" format="tabular" label="Select data file :"/>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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18 <param name="col_dimensions" multiple="true" type="data_column" data_ref="infile" use_header_names="true" display="checkboxes" label="Select the columns for dimentions:"/>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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19 <param name="col_color" type="data_column" data_ref="infile" use_header_names="true" label="Select a column containg the values for coloring:" help="e.g. mean_test_score"/>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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20 </inputs>
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21
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22 <outputs>
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23 <data name="output" format="html" from_work_dir="output.html" label="Plot visualization of tabular data on ${on_string}"/>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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24 </outputs>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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25 <tests>
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26 <test>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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27 <param name="infile" value="parcoords01.tabular" ftype="tabular"/>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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28 <param name="col_dimensions" value="4,5"/>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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29 <param name="col_color" value="3"/>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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30 <output name="output" file="parcoords_plot01.html" compare="sim_size"/>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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31 </test>
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32 <test>
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33 <param name="infile" value="parcoords02.tabular" ftype="tabular"/>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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34 <param name="col_dimensions" value="4,5"/>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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35 <param name="col_color" value="3"/>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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36 <output name="output" file="parcoords_plot02.html" compare="sim_size"/>
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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37 </test>
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38 </tests>
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39 <help><![CDATA[
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40 **What it does**
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41
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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42
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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43 Produce a `parallel coordinates plot <https://plot.ly/python/parallel-coordinates-plot/>`_ from a tabular file.
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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44 Multiple columns are chosen for dimensions and a single column for coloring. The plot is buried in a html file which
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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45 provides rich interactive features. Image can be saved in various format, such as 'png', 'svg', 'jpeg' and so on.
2da0fddf2bdb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
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46
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47
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48 ]]>
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49 </help>
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50 </tool>