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annotate tool_dependencies.xml @ 8:57f8e8df6f2a

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ChemicalToolBoX update.
author Bjoern Gruening <bjoern.gruening@gmail.com>
date Tue, 23 Jul 2013 00:52:29 +0200
parents e1a5e214c51c
children cd2e7872a8eb
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <tool_dependency>
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3 <package name="lapack" version="3.4.2">
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4 <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
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5 </package>
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6 <package name="atlas" version="3.10.1">
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7 <repository changeset_revision="68df9078bf69" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
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8 </package>
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9 <package name="numpy" version="1.7.1">
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10 <repository changeset_revision="a0f0a86440ca" name="package_numpy_1_7" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
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11 </package>
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12 <package name="scipy" version="0.12.0">
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13 <install version="1.0">
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14 <actions>
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15 <action type="download_by_url">http://downloads.sourceforge.net/project/scipy/scipy/0.12.0/scipy-0.12.0.tar.gz</action>
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16 <action type="set_environment_for_install">
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17 <repository changeset_revision="68df9078bf69" name="package_atlas_3_10" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
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18 <package name="atlas" version="3.10.1" />
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19 </repository>
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20 <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
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21 <package name="lapack" version="3.4.2" />
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22 </repository>
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23 <repository changeset_revision="a0f0a86440ca" name="package_numpy_1_7" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
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24 <package name="numpy" version="1.7.1" />
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25 </repository>
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26 </action>
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27 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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28 <action language="cheetah" type="template_command">
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29 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python &amp;&amp;
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31 #if env.get('ATLAS_LIB_DIR', False):
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32 export ATLAS=$env.ATLAS_LIB_DIR/libatlas.a &amp;&amp;
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33 #end if
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34 #if env.get('LAPACK_LIB_DIR', False):
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35 export BLAS=$env.LAPACK_LIB_DIR/libblas.a &amp;&amp;
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36 export LAPACK=$env.LAPACK_LIB_DIR/liblapack.a &amp;&amp;
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37 #end if
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38
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39 export PATH=\$PATH:$env.PATH_NUMPY &amp;&amp;
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40 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY &amp;&amp;
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41 python setup.py install --home $env.INSTALL_DIR --install-scripts $env.INSTALL_DIR/bin
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42 </action>
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43 <action type="set_environment">
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44 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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45 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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46 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
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47 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
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48 <environment_variable action="set_to" name="PYTHONPATH_SCIPY">$INSTALL_DIR/lib/python</environment_variable>
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49 <environment_variable action="set_to" name="PATH_SCIPY">$INSTALL_DIR/bin</environment_variable>
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50 </action>
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51 </actions>
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52 </install>
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53 <readme>Compiling scipy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for scipy can be accessed through PYTHONPATH_SCIPY and the binaries with PATH_SCIPY.</readme>
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54 </package>
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55 </tool_dependency>