Mercurial > repos > bgruening > package_scikit_learn_0_13
changeset 1:b5281db9289d
ChemicalToolBoX update.
| author | Bjoern Gruening <bjoern.gruening@gmail.com> |
|---|---|
| date | Mon, 22 Jul 2013 17:05:41 +0200 |
| parents | 4cd10b193b52 |
| children | d14139ad5e84 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 25 insertions(+), 17 deletions(-) [+] |
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--- a/tool_dependencies.xml Mon Jun 03 12:35:07 2013 -0400 +++ b/tool_dependencies.xml Mon Jul 22 17:05:41 2013 +0200 @@ -1,19 +1,19 @@ -<?xml version="1.0"?> +<?xml version='1.0' encoding='utf-8'?> <tool_dependency> <package name="lapack" version="3.4.2"> - <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> <package name="atlas" version="3.10.1"> - <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="68df9078bf69" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> <package name="numpy" version="1.7.1"> - <repository changeset_revision="ad6ebe2c75ef" name="package_numpy_1_7" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="62fda117ad4a" name="package_numpy_1_7" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> <package name="scipy" version="0.12.0"> - <repository changeset_revision="e4f395310680" name="package_scipy_0_12" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="0a80636e2735" name="package_scipy_0_12" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> <package name="matplotlib" version="1.2.1"> - <repository changeset_revision="c888aa8ed318" name="package_matplotlib_1_2" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="293ce490fc22" name="package_matplotlib_1_2" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> <package name="scikit_learn" version="0.13.1"> @@ -21,32 +21,40 @@ <actions> <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action> <action type="set_environment_for_install"> - <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="68df9078bf69" name="package_atlas_3_10" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/"> <package name="atlas" version="3.10.1" /> </repository> - <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/"> <package name="lapack" version="3.4.2" /> </repository> - <repository changeset_revision="ad6ebe2c75ef" name="package_numpy_1_7" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="62fda117ad4a" name="package_numpy_1_7" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/"> <package name="numpy" version="1.7.1" /> </repository> - <repository changeset_revision="e4f395310680" name="package_scipy_0_12" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="0a80636e2735" name="package_scipy_0_12" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/"> <package name="scipy" version="0.12.0" /> </repository> - <repository changeset_revision="c888aa8ed318" name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="293ce490fc22" name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/"> <package name="matplotlib" version="1.2.1" /> </repository> </action> <action type="make_directory">$INSTALL_DIR/lib/python</action> - <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && - export BLAS=$LAPACK_LIB_DIR/libblas.a && - export LAPACK=$LAPACK_LIB_DIR/liblapack.a && - export ATLAS=$ATLAS_LIB_DIR/libatlas.a && + <action language="cheetah" type="template_command"> + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && + + #if env.get('ATLAS_LIB_DIR', False): + export ATLAS=$ATLAS_LIB_DIR/libatlas.a && + #end if + #if env.get('LAPACK_LIB_DIR', False): + export BLAS=$LAPACK_LIB_DIR/libblas.a && + export LAPACK=$LAPACK_LIB_DIR/liblapack.a && + #end if + export PATH=$PATH:$PATH_NUMPY && export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_SCIPY:$PYTHONPATH_MATPLOTLIB && - python setup.py install --home $INSTALL_DIR</action> + python setup.py install --home $INSTALL_DIR + </action> <action type="set_environment"> <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> @@ -62,4 +70,4 @@ </install> <readme>Compiling scikit-learn requires a C compiler (typically gcc). The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN.</readme> </package> -</tool_dependency> +</tool_dependency> \ No newline at end of file