Mercurial > repos > bgruening > package_scikit_learn_0_13

changeset 0:4cd10b193b52

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Uploaded
author bgruening
date Mon, 03 Jun 2013 12:35:07 -0400
parents
children b5281db9289d
files tool_dependencies.xml
diffstat 1 files changed, 65 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Jun 03 12:35:07 2013 -0400
@@ -0,0 +1,65 @@
+<?xml version="1.0"?>
+<tool_dependency>
+        <package name="lapack" version="3.4.2">
+            <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        </package>
+        <package name="atlas" version="3.10.1">
+            <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        </package>
+        <package name="numpy" version="1.7.1">
+            <repository changeset_revision="ad6ebe2c75ef" name="package_numpy_1_7" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        </package>
+        <package name="scipy" version="0.12.0">
+            <repository changeset_revision="e4f395310680" name="package_scipy_0_12" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        </package>
+        <package name="matplotlib" version="1.2.1">
+            <repository changeset_revision="c888aa8ed318" name="package_matplotlib_1_2" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        </package>
+
+        <package name="scikit_learn" version="0.13.1">
+            <install version="1.0">
+                <actions>
+                    <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action>
+                    <action type="set_environment_for_install">
+                        <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                            <package name="atlas" version="3.10.1" />
+                        </repository>
+                        <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                            <package name="lapack" version="3.4.2" />
+                        </repository>
+                        <repository changeset_revision="ad6ebe2c75ef" name="package_numpy_1_7" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                            <package name="numpy" version="1.7.1" />
+                        </repository>
+                        <repository changeset_revision="e4f395310680" name="package_scipy_0_12" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                            <package name="scipy" version="0.12.0" />
+                        </repository>
+                        <repository changeset_revision="c888aa8ed318" name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                            <package name="matplotlib" version="1.2.1" />
+                        </repository>
+                    </action>
+
+                    <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                    <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
+                    export BLAS=$LAPACK_LIB_DIR/libblas.a &amp;&amp; 
+                    export LAPACK=$LAPACK_LIB_DIR/liblapack.a &amp;&amp; 
+                    export ATLAS=$ATLAS_LIB_DIR/libatlas.a &amp;&amp; 
+                    export PATH=$PATH:$PATH_NUMPY &amp;&amp; 
+                    export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_SCIPY:$PYTHONPATH_MATPLOTLIB &amp;&amp;
+
+                    python setup.py install --home $INSTALL_DIR</action>
+                    <action type="set_environment">
+                        <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                        <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
+                        <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
+                        <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
+                        <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable>
+                        <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable>
+
+                        <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable>
+                        </action>
+                </actions>
+            </install>
+            <readme>Compiling scikit-learn requires a C compiler (typically gcc). The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN.</readme>
+        </package>
+</tool_dependency>