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1 <?xml version="1.0"?>
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2 <tool_dependency>
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2
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3 <package name="atlas" version="3.10.1">
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7
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4 <repository changeset_revision="68df9078bf69" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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8
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6 <package name="readline" version="6.2">
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7 <repository changeset_revision="b936498ae90c" name="package_readline_6_2" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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2
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9 <package name="R_3_0_1" version="3.0.1">
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10 <install version="1.0">
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11 <actions>
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2
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12 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action>
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13 <action type="set_environment_for_install">
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7
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14 <repository changeset_revision="68df9078bf69" name="package_atlas_3_10" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
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2
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15 <package name="atlas" version="3.10.1" />
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16 </repository>
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17 <repository changeset_revision="b936498ae90c" name="package_readline_6_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
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18 <package name="readline" version="6.2" />
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19 </repository>
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20 </action>
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21
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22 <action language="cheetah" type="template_command">
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23 #set $cmd = './configure'
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24 #if env.get('ATLAS_LIB_DIR', False):
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25 #set $cmd += ' --with-blas="-L%s -lptf77blas -lpthread -latlas" ' % $env.ATLAS_LIB_DIR
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3
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26 #end if
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4
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27
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28 #if env.get('READLINE_LIB_PATH', False):
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29 export LDFLAGS=-L$env.READLINE_LIB_PATH &&
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30 export CPPFLAGS=-I$env.READLINE_INCLUDE_PATH &&
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31 #set $cmd += ' --with-readline=yes '
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32 #else:
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33 #set $cmd += ' --with-readline=no '
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34 #end if
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35
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36 #set $cmd += ' --enable-R-shlib --with-x=no --libdir=%s/lib/ --bindir=%s/bin/ --datarootdir=%s/share/' % ($env.INSTALL_DIR, $env.INSTALL_DIR, $env.INSTALL_DIR)
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37 $cmd
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2
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38 </action>
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4
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39 <action type="shell_command">make</action>
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40 <action type="shell_command">make install</action>
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41 <action type="set_environment">
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42 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
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43 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
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44 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
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45 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable>
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46 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
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47 <environment_variable action="set_to" name="R_PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
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48 </action>
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49 </actions>
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50 </install>
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51 <readme>R is a free software environment for statistical computing and graphics. http://www.r-project.org/</readme>
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52 </package>
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53 </tool_dependency>
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