Mercurial > repos > bgruening > package_openms_latest

changeset 0:569f2d0b7cc2 draft

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Uploaded
author bgruening
date Wed, 08 Oct 2014 11:29:31 -0400
parents
children 4e8b981dda61
files tool_dependencies.xml
diffstat 1 files changed, 63 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Oct 08 11:29:31 2014 -0400
@@ -0,0 +1,63 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="libtool" version="2.4">
+        <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="Qt" version="4.8">
+        <repository changeset_revision="86f0174a029a" name="package_qt_4_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="zlib" version="1.2.8">
+        <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bzlib" version="1.0.6">
+        <repository changeset_revision="2dec91192fc7" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="openms" version="1.11.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://share.gruenings.eu/OpenMS.tar.bz2</action>
+                <!-- populate the environment variables from the dependend repos -->
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="libtool" version="2.4" />
+                    </repository>
+                    <repository changeset_revision="86f0174a029a" name="package_qt_4_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="Qt" version="4.8" />
+                    </repository>
+                    <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="zlib" version="1.2.8" />
+                    </repository>
+                    <repository changeset_revision="2dec91192fc7" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="bzlib" version="1.0.6" />
+                    </repository>
+                </action>
+
+                <action type="change_directory">contrib</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=SEQAN</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=LIBSVM</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=XERCESC</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=GSL</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=BOOST</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=COINOR</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=BZIP2</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=GLPK</action>
+
+                <action type="change_directory">..</action>
+                <action type="shell_command">cmake . -DINSTALL_PREFIX=$INSTALL_DIR</action>
+                <action type="shell_command">make doc_minimal</action>
+                <action type="shell_command">make install</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[QT_ROOT_DIR]/lib/</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            This package downloads and installs OpenMS.
+            http://open-ms.sourceforge.net/
+            
+            Requirements: OpenGL is needed to compile OpenMS. You can find libopengl.so usually in some mesa libraries.
+        </readme>
+    </package>
+</tool_dependency>