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<?xml version="1.0"?>
<tool_dependency>
    <package name="libtool" version="2.4">
        <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="Qt" version="4.8">
        <repository changeset_revision="86f0174a029a" name="package_qt_4_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="zlib" version="1.2.8">
        <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="bzlib" version="1.0.6">
        <repository changeset_revision="2dec91192fc7" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="openms" version="1.11.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://share.gruenings.eu/OpenMS.tar.bz2</action>
                <!-- populate the environment variables from the dependend repos -->
                <action type="set_environment_for_install">
                    <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="libtool" version="2.4" />
                    </repository>
                    <repository changeset_revision="86f0174a029a" name="package_qt_4_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="Qt" version="4.8" />
                    </repository>
                    <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="zlib" version="1.2.8" />
                    </repository>
                    <repository changeset_revision="2dec91192fc7" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="bzlib" version="1.0.6" />
                    </repository>
                </action>

                <action type="change_directory">contrib</action>
                <action type="shell_command">cmake . -DBUILD_TYPE=SEQAN</action>
                <action type="shell_command">cmake . -DBUILD_TYPE=LIBSVM</action>
                <action type="shell_command">cmake . -DBUILD_TYPE=XERCESC</action>
                <action type="shell_command">cmake . -DBUILD_TYPE=GSL</action>
                <action type="shell_command">cmake . -DBUILD_TYPE=BOOST</action>
                <action type="shell_command">cmake . -DBUILD_TYPE=COINOR</action>
                <action type="shell_command">cmake . -DBUILD_TYPE=BZIP2</action>
                <action type="shell_command">cmake . -DBUILD_TYPE=GLPK</action>

                <action type="change_directory">..</action>
                <action type="shell_command">cmake . -DINSTALL_PREFIX=$INSTALL_DIR</action>
                <action type="shell_command">make doc_minimal</action>
                <action type="shell_command">make install</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[QT_ROOT_DIR]/lib/</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            This package downloads and installs OpenMS.
            http://open-ms.sourceforge.net/
            
            Requirements: OpenGL is needed to compile OpenMS. You can find libopengl.so usually in some mesa libraries.
        </readme>
    </package>
</tool_dependency>