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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="libtool" version="2.4">
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4 <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="Qt" version="4.8">
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6
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7 <repository changeset_revision="d05194d4dc93" name="package_qt_4_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="zlib" version="1.2.8">
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10 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="bzlib" version="1.0.6">
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7
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13 <repository changeset_revision="d971aef661a7" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="boost" version="1.55.0">
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16 <repository changeset_revision="9fbaadc2f81a" name="package_boost_1_55" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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17 </package>
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18 <package name="openms" version="1.12">
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19 <install version="1.0">
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20 <actions>
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21 <action type="download_by_url">http://share.gruenings.eu/OpenMS.tar.bz2</action>
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22 <!-- populate the environment variables from the dependend repos -->
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23 <action type="set_environment_for_install">
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24 <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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25 <package name="libtool" version="2.4" />
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26 </repository>
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6
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27 <repository changeset_revision="d05194d4dc93" name="package_qt_4_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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28 <package name="Qt" version="4.8" />
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29 </repository>
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30 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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31 <package name="zlib" version="1.2.8" />
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32 </repository>
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33 <repository changeset_revision="d971aef661a7" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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34 <package name="bzlib" version="1.0.6" />
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35 </repository>
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7
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36 <repository changeset_revision="9fbaadc2f81a" name="package_boost_1_55" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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37 <package name="boost" version="1.55.0" />
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38 </repository>
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39 </action>
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40
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41 <action type="change_directory">contrib</action>
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42 <action type="shell_command">cmake . -DBUILD_TYPE=SEQAN</action>
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43 <action type="shell_command">cmake . -DBUILD_TYPE=LIBSVM</action>
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44 <action type="shell_command">cmake . -DBUILD_TYPE=XERCESC</action>
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45 <action type="shell_command">cmake . -DBUILD_TYPE=GSL</action>
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7
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46 <!--action type="shell_command">cmake . -DBUILD_TYPE=BOOST -DNUMBER_OF_JOBS=4</action-->
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47 <action type="shell_command">cmake . -DBUILD_TYPE=COINOR</action>
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48 <action type="shell_command">cmake . -DBUILD_TYPE=BZIP2</action>
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49 <action type="shell_command">cmake . -DBUILD_TYPE=GLPK</action>
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50 <action type="shell_command">cmake . -DBUILD_TYPE=EIGEN</action>
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4
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51 <action type="shell_command">cmake . -DBUILD_TYPE=WILDMAGIC</action>
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52
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53 <action type="change_directory">..</action>
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54 <action type="shell_command">cmake . -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DHAS_XSERVER=OFF -DENABLE_TUTORIALS=OFF -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF -DENABLE_STYLE_TESTING=OFF -DENABLE_UNITYBUILD=OFF -DWITH_GUI=OFF -DBoost_INCLUDE_DIR=$BOOST_ROOT_DIR/include/</action>
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55 <action type="shell_command">make OpenMS TOPP UTILS</action>
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56 <action type="shell_command">make install</action>
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4
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57 <!-- ToDo can we get it easily without svn? Is this included in the final tarball? -->
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58 <!-- svn checkout http://svn.code.sf.net/p/open-ms/code/THIRDPARTY/SEARCHENGINES/Linux/64bit/ _searchengines -->
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59 <action type="set_environment">
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60 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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61 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
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62 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[QT_ROOT_DIR]/lib/</environment_variable>
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63 <environment_variable action="set_to" name="OPENMS_ROOT_PATH">$INSTALL_DIR</environment_variable>
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64 <environment_variable action="set_to" name="OPENMS_DATA_PATH">$INSTALL_DIR/share/OpenMS/</environment_variable>
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65 </action>
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66 </actions>
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67 </install>
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68 <readme>
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69 This package downloads and installs OpenMS.
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70 http://open-ms.sourceforge.net/
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71 </readme>
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72 </package>
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73 </tool_dependency>
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