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<?xml version="1.0"?>
<tool_dependency>
    <package name="zlib" version="1.2.8">
        <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="htslib" version="1.2.1">
        <install version="1.0">
            <actions>
                <action target_filename="htslib-1.2.1" type="download_by_url">https://github.com/samtools/htslib/archive/1.2.1.tar.gz</action>

                <action type="set_environment_for_install">
                    <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="zlib" version="1.2.8" />
                    </repository>
                </action>

                <action type="shell_command">make</action>
                <action type="move_directory_files">
                    <source_directory>htslib</source_directory>
                    <destination_directory>$INSTALL_DIR/lib</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/htslib</environment_variable>
                    <environment_variable action="prepend_to" name="HTSLIB_LIB_DIR">$INSTALL_DIR/lib</environment_variable>
                    <environment_variable action="prepend_to" name="HTSLIB_ROOT_PATH">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        C library for high-throughput sequencing data formats
        https://github.com/samtools/htslib
        </readme>
    </package>
</tool_dependency>