Mercurial > repos > bgruening > osra
changeset 23:e41a468bc40d draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit ed9b6859de648aa5f7cde483732f5df20aaff90e
| author | bgruening |
|---|---|
| date | Tue, 07 May 2019 13:28:05 -0400 |
| parents | 6cafe4f5d181 |
| children | |
| files | osra.xml test-data/CID_2244.jpg test-data/CID_2244.png |
| diffstat | 3 files changed, 8 insertions(+), 2 deletions(-) [+] |
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--- a/osra.xml Thu Nov 09 03:41:26 2017 -0500 +++ b/osra.xml Tue May 07 13:28:05 2019 -0400 @@ -1,7 +1,8 @@ <tool id="ctb_osra" name="Molecule recognition" version="2.1.0"> - <description>in Images or PDF documents (OSRA)</description> + <description>in PDF documents (OSRA)</description> <requirements> <requirement type="package" version="2.1.0">osra</requirement> + <requirement type="package" version="0.52">poppler</requirement> </requirements> <command detect_errors="aggressive"> <![CDATA[ @@ -44,6 +45,11 @@ <param name="oformat" value="sdf"/> <output name="outfile" ftype="sdf" file="osra_on_CID2244.sdf"/> </test> + <!-- <test> + <param name="infile" value="CID_2244.png" ftype="png"/> + <param name="oformat" value="sdf"/> + <output name="outfile" ftype="sdf" file="osra_on_CID2244.sdf"/> + </test> --> <!--test> PNGs producing a core-dump in osra <param name="infile" value="2008001635_153_chem.png"/> @@ -58,7 +64,7 @@ **What this tool does** -OSRA_ (Optical Structure Recognition Application) is a utility designed to convert graphical representations of chemical structures into SMILES or SDF. It generates the SMILES or SDF representation of any molecular structure image within a document which is parseable by GraphicMagick. +OSRA_ (Optical Structure Recognition Application) is a utility designed to convert graphical representations of chemical structures, contained within a PDF file, into a SMILES or SDF representation. .. _OSRA: http://cactus.nci.nih.gov/osra/