Mercurial > repos > bgruening > osra
changeset 13:ab9e2350406b
Uploaded
| author | bgruening |
|---|---|
| date | Sat, 25 May 2013 12:55:38 -0400 |
| parents | f265bcf0ddc5 |
| children | 133eeeed0865 |
| files | osra.xml repository_dependencies.xml tool_dependencies.xml |
| diffstat | 3 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/osra.xml Thu May 23 17:30:05 2013 -0400 +++ b/osra.xml Sat May 25 12:55:38 2013 -0400 @@ -2,6 +2,8 @@ <description>in Images or PDF documents (OSRA)</description> <requirements> <requirement type="package" version="2.0.0">osra</requirement> + <requirement type="package" version="2.3.2">openbabel</requirement> + <requirement type="package" version="1.3.18">graphicsmagick</requirement> </requirements> <command interpreter='python'> ## OSRA_DATA_FILES is set during the toolshed Installation
--- a/repository_dependencies.xml Thu May 23 17:30:05 2013 -0400 +++ b/repository_dependencies.xml Sat May 25 12:55:38 2013 -0400 @@ -1,4 +1,4 @@ <?xml version="1.0"?> <repositories description="This requires the Molecule datatype definitions (e.g. SMILES, InChI, SD-format)."> - <repository changeset_revision="bd886859b184" name="molecule_datatypes" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="c5383bd4d006" name="molecule_datatypes" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </repositories>
--- a/tool_dependencies.xml Thu May 23 17:30:05 2013 -0400 +++ b/tool_dependencies.xml Sat May 25 12:55:38 2013 -0400 @@ -61,7 +61,7 @@ <action type="shell_command">rm $INSTALL_DIR/cuneiform/ -r</action> <action type="set_environment"> - <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[$GRAPHICSMAGICK_ROOT_DIR]/lib/</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[GRAPHICSMAGICK_ROOT_DIR]/lib/</environment_variable> <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/potrace/build/lib/</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> <!-- OSRA_DATA_FILES is only used by the galaxy wrapper and is not part of OSRA -->