view SpecLibCreator.xml @ 0:3d84209d3178 draft

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<?xml version='1.0' encoding='UTF-8'?>
<tool id="SpecLibCreator" name="SpecLibCreator" version="1.12.0">
  <description>Creates an MSP formatted spectral library.</description>
  <macros>
    <token name="@EXECUTABLE@">SpecLibCreator</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>SpecLibCreator

-info ${param_info}
-itemseperator ${param_itemseperator}
${param_itemenclosed}
-spec ${param_spec}
-out ${param_out}
-threads \${GALAXY_SLOTS:-24} 
</command>
  <inputs>
    <param name="param_info" type="data" format="tabular" optional="False" label="Holds id, peptide, retention time etc." help="(-info)"/>
    <param name="param_itemseperator" type="text" size="20" value="," label=" Seperator between items. e.g. ," help="(-itemseperator)"/>
    <param name="param_itemenclosed" type="boolean" truevalue="-itemenclosed true" falsevalue="-itemenclosed false" checked="false" optional="True" label="'true' or 'false' if true every item is enclosed e.g. '$peptide$,$run$..." help="(-itemenclosed)"/>
    <param name="param_spec" type="data" format="mzXML" optional="False" label="spectra" help="(-spec)"/>
  </inputs>
  <outputs>
    <data name="param_out" label="output MSP formated spectra library" format="data"/>
  </outputs>
  <help>**What it does**

Creates an MSP formatted spectral library.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SpecLibCreator.html

@REFERENCES@
</help>
</tool>