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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="SpecLibCreator" name="SpecLibCreator" version="1.12.0">
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3 <description>Creates an MSP formatted spectral library.</description>
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4 <macros>
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5 <token name="@EXECUTABLE@">SpecLibCreator</token>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio"/>
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9 <expand macro="requirements"/>
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10 <command>SpecLibCreator
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11
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12 -info ${param_info}
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13 -itemseperator ${param_itemseperator}
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14 ${param_itemenclosed}
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15 -spec ${param_spec}
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16 -out ${param_out}
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17 -threads \${GALAXY_SLOTS:-24}
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18 </command>
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19 <inputs>
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20 <param name="param_info" type="data" format="tabular" optional="False" label="Holds id, peptide, retention time etc." help="(-info)"/>
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21 <param name="param_itemseperator" type="text" size="20" value="," label=" Seperator between items. e.g. ," help="(-itemseperator)"/>
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22 <param name="param_itemenclosed" type="boolean" truevalue="-itemenclosed true" falsevalue="-itemenclosed false" checked="false" optional="True" label="'true' or 'false' if true every item is enclosed e.g. '$peptide$,$run$..." help="(-itemenclosed)"/>
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23 <param name="param_spec" type="data" format="mzXML" optional="False" label="spectra" help="(-spec)"/>
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24 </inputs>
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25 <outputs>
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26 <data name="param_out" label="output MSP formated spectra library" format="data"/>
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27 </outputs>
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28 <help>**What it does**
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29
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30 Creates an MSP formatted spectral library.
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31
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32
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33 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SpecLibCreator.html
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34
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35 @REFERENCES@
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36 </help>
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37 </tool>
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