diff SpecLibCreator.xml @ 0:3d84209d3178 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SpecLibCreator.xml	Fri Oct 10 18:20:03 2014 -0400
@@ -0,0 +1,37 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="SpecLibCreator" name="SpecLibCreator" version="1.12.0">
+  <description>Creates an MSP formatted spectral library.</description>
+  <macros>
+    <token name="@EXECUTABLE@">SpecLibCreator</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>SpecLibCreator
+
+-info ${param_info}
+-itemseperator ${param_itemseperator}
+${param_itemenclosed}
+-spec ${param_spec}
+-out ${param_out}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_info" type="data" format="tabular" optional="False" label="Holds id, peptide, retention time etc." help="(-info)"/>
+    <param name="param_itemseperator" type="text" size="20" value="," label=" Seperator between items. e.g. ," help="(-itemseperator)"/>
+    <param name="param_itemenclosed" type="boolean" truevalue="-itemenclosed true" falsevalue="-itemenclosed false" checked="false" optional="True" label="'true' or 'false' if true every item is enclosed e.g. '$peptide$,$run$..." help="(-itemenclosed)"/>
+    <param name="param_spec" type="data" format="mzXML" optional="False" label="spectra" help="(-spec)"/>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="output MSP formated spectra library" format="data"/>
+  </outputs>
+  <help>**What it does**
+
+Creates an MSP formatted spectral library.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SpecLibCreator.html
+
+@REFERENCES@
+</help>
+</tool>