Mercurial > repos > bgruening > natural_product_likeness

changeset 13:3901bf4244f2

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
upgrade to version 2.0
author Bjoern Gruening <bjoern.gruening@gmail.com>
date Sat, 22 Jun 2013 14:08:38 +0200 (2013-06-22)
parents 8b3ed5924206
children 08e8e01c6fcb
files natural_product_likeness_calculator.xml tool_dependencies.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/natural_product_likeness_calculator.xml	Sat Jun 22 13:56:14 2013 +0200
+++ b/natural_product_likeness_calculator.xml	Sat Jun 22 14:08:38 2013 +0200
@@ -5,7 +5,7 @@
         <requirement type="package" version="2.0">np-likeness-scorer</requirement>
     </requirements>
     <command>
-        java -jar \$JAVA_JAR_PATH/NP-Likeness-2.0.jar
+        java -jar \$NPLS_JAR_PATH/NP-Likeness-2.0.jar
             -in "${infile}"
             -out "${outfile}"
             #if $reconstruct_fragments:
--- a/tool_dependencies.xml	Sat Jun 22 13:56:14 2013 +0200
+++ b/tool_dependencies.xml	Sat Jun 22 14:08:38 2013 +0200
@@ -5,10 +5,10 @@
                 <action type="download_by_url">http://downloads.sourceforge.net/project/np-likeness/Natural_Product_Likeness_calculator_2.0.zip</action>
                <action type="move_file">
                     <source>Natural_Product_Likeness_calculator_2.0/NP-Likeness-2.0.jar</source>
-                    <destination>$INSTALL_DIR/jars</destination>
+                    <destination>$INSTALL_DIR</destination>
                 </action>
                 <action type="set_environment">
-                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable>
+                    <environment_variable name="NPLS_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                 </action>
             </actions>
         </install>