Mercurial > repos > bgruening > mlocarna
view test-data/haca.snoRNA-default.stdout @ 0:74fa55f35f0d draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mlocarna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
| author | bgruening |
|---|---|
| date | Tue, 06 Dec 2016 11:38:49 -0500 |
| parents | |
| children |
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mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.8.12 Copyright Sebastian Will Compute pair probs ... Compute pairwise alignments ... Perform progressive alignment ... ACA7 ACCUCCUGGGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGGAGGGAAAGCAAGCCUGGCAGAG-GCACCCAUUCCAUUCCCAGCUUGCUCCGUAGCUGGCG ACA30 UGGCACUUUCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGUGCUGAGAGAAAAC---CC-UUG---AUUGUAUUCUUGCCCUGGG---AUUAUACCAGUGG ACA5 UGCAGCCGUGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGCUGCCACAGAAACAC--UGUGAC-UCAUGG-----GCCCUGUUCCUGUGUCCCAGGCUCAG ACA59 GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCCCAGCUGG-CCCAUGGGUGAC--CCUGGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAUGUAGUGAGGGUA #A1 ................................................................AAAAAA.................................................. #A2 ................................................................123456.................................................. ACA7 AUUGGA--AGA---CACU-CUGCG-----ACA ACA30 CAACUG--UCA---CUCA-AUGGG-----ACA ACA5 GGAUAA--AUU---UGGU-UACAG-----ACA ACA59 ACAAUACUUACUCUCGUUGGUGAUAAGGAACA #A1 .............................BBB #A2 .............................123 alifold .((((((((........((((.(((((((......))))))).))))......))..)))))).............((((((.....((.....((((((((((((.....))))))))) )))......)).....)).))))......... (-61.69 = -33.85 + -27.84)