Mercurial > repos > bgruening > minced

Galaxy wrapper for minced
=========================

This wrapper is copyright 2014 by Björn Grüning and Omer Alkhnbashi

MinCED - Mining CRISPRs in Environmental Datasets

MinCED is a program to find Clustered Regularly Interspaced Short Palindromic
Repeats (CRISPRs) in full genomes or environmental datasets such as metagenomes,
in which sequence size can be anywhere from 100 to 800 bp. MinCED runs from the
command-line and was derived from CRT (http://www.room220.com/crt/):
  Charles Bland et al., CRISPR Recognition Tool (CRT): a tool for automatic
  detection of clustered regularly interspaced palindromic repeats, BMC
  Bioinformatics 8, no. 1 (2007): 209.

https://github.com/ctSkennerton/minced


Installation
============

Galaxy should be able to automatically install the dependencies.


History
=======

v0.1 - Initial public release


Licence (MIT)
=============

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in
all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
THE SOFTWARE.
author	bgruening
date	Sun, 18 Sep 2016 06:18:17 -0400
parents	5ead4a4f46bd
children