Mercurial > repos > bgruening > intarna

changeset 2:c78f8fa497ab draft default tip

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Uploaded
author bernhardlutz
date Tue, 14 Jan 2014 15:56:14 -0500
parents d0d268f86e45
children
files tool_dependencies.xml
diffstat 1 files changed, 17 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Jan 14 15:49:55 2014 -0500
+++ b/tool_dependencies.xml	Tue Jan 14 15:56:14 2014 -0500
@@ -4,6 +4,22 @@
         <repository changeset_revision="18c7086dbb43" name="package_vienna_rna_1_8" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="intarna" version="1.2.5">
-        <repository changeset_revision="6d5160860a70" name="package_intarna_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.bioinf.uni-freiburg.de/Software/IntaRNA/intarna-1.2.5.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="18c7086dbb43" name="package_vienna_rna_1_8" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="vienna_rna" version="1.8.5" />
+                    </repository>
+                </action>
+                <action type="shell_command">./configure --prefix $INSTALL_DIR --with-RNA=$ROOT_VIENNA_RNA_DIR</action>
+                <action type="make_install" />
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+                
+            </actions>
+        </install>
+        <readme>Compiling IntaRNA requires a C compiler (typically gcc)</readme>
     </package>
 </tool_dependency>