# HG changeset patch
# User bernhardlutz
# Date 1389732974 18000
# Node ID c78f8fa497ab35bf1cc1338029023c9c984fb26e
# Parent  d0d268f86e45a7d6488a516f62c1eb346c26826f
Uploaded

diff -r d0d268f86e45 -r c78f8fa497ab tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Jan 14 15:49:55 2014 -0500
+++ b/tool_dependencies.xml	Tue Jan 14 15:56:14 2014 -0500
@@ -4,6 +4,22 @@
         <repository changeset_revision="18c7086dbb43" name="package_vienna_rna_1_8" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="intarna" version="1.2.5">
-        <repository changeset_revision="6d5160860a70" name="package_intarna_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.bioinf.uni-freiburg.de/Software/IntaRNA/intarna-1.2.5.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="18c7086dbb43" name="package_vienna_rna_1_8" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="vienna_rna" version="1.8.5" />
+                    </repository>
+                </action>
+                <action type="shell_command">./configure --prefix $INSTALL_DIR --with-RNA=$ROOT_VIENNA_RNA_DIR</action>
+                <action type="make_install" />
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+                
+            </actions>
+        </install>
+        <readme>Compiling IntaRNA requires a C compiler (typically gcc)</readme>
     </package>
 </tool_dependency>