Mercurial > repos > bgruening > hicexplorer_hiccorrelate

diff hicCorrelate.xml @ 1:3fc885f53423 draft

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planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 2f347b0756d720114f037ed1ff9ba4836e1b3b04
author bgruening
date Wed, 29 Mar 2017 18:21:56 -0400
parents 1b41da63ef0a
children 4ef71736c95a
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line diff
--- a/hicCorrelate.xml	Sun Oct 09 17:35:58 2016 -0400
+++ b/hicCorrelate.xml	Wed Mar 29 18:21:56 2017 -0400
@@ -27,7 +27,7 @@
                 --chromosomes #echo '" "'.join([ '"%s"' % $chrom for $chrom in $chromosomes ])#
             #end if
 
-            --colorMap $colorMap
+            --colorMap $colormap
 
             --outFileNameHeatmap ./heatmap.png
             --outFileNameScatter ./scatter.png
@@ -67,15 +67,15 @@
     <tests>
         <test>
             <repeat name="input_files">
-                <param name="matrix" value="hicCorrectMatrix_result2.npz.h5" ftype="h5"/>
+                <param name="matrix" value="hicCorrectMatrix_result1.npz.h5" ftype="h5"/>
                 <param name="mlabel" value="first"/>
             </repeat>
             <repeat name="input_files">
-                <param name="matrix" value="hicCorrectMatrix_result2.npz.h5" ftype="h5" />
+                <param name="matrix" value="hicCorrectMatrix_result1.npz.h5" ftype="h5" />
                 <param name="mlabel" value="second"/>
             </repeat>
             <param name="log1p" value="True"/>
-            <param name="colorMap" value="jet"/>
+            <param name="colormap" value="jet"/>
             <param name="method" value="spearman"/>
             <output name="outFileNameHeatmap" file="hicCorrelate_heatmap_result1.png" ftype="png" compare="sim_size"/>
             <output name="outFileNameScatter" file="hicCorrelate_scatter_result1.png" ftype="png" compare="sim_size"/>