Mercurial > repos > bgruening > hicexplorer_hiccorrelate
comparison hicCorrelate.xml @ 1:3fc885f53423 draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 2f347b0756d720114f037ed1ff9ba4836e1b3b04
| author | bgruening |
|---|---|
| date | Wed, 29 Mar 2017 18:21:56 -0400 |
| parents | 1b41da63ef0a |
| children | 4ef71736c95a |
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| 0:1b41da63ef0a | 1:3fc885f53423 |
|---|---|
| 25 | 25 |
| 26 #if $chromosomes: | 26 #if $chromosomes: |
| 27 --chromosomes #echo '" "'.join([ '"%s"' % $chrom for $chrom in $chromosomes ])# | 27 --chromosomes #echo '" "'.join([ '"%s"' % $chrom for $chrom in $chromosomes ])# |
| 28 #end if | 28 #end if |
| 29 | 29 |
| 30 --colorMap $colorMap | 30 --colorMap $colormap |
| 31 | 31 |
| 32 --outFileNameHeatmap ./heatmap.png | 32 --outFileNameHeatmap ./heatmap.png |
| 33 --outFileNameScatter ./scatter.png | 33 --outFileNameScatter ./scatter.png |
| 34 ]]> | 34 ]]> |
| 35 </command> | 35 </command> |
| 65 <data name="outFileNameScatter" from_work_dir="scatter.png" format="png" /> | 65 <data name="outFileNameScatter" from_work_dir="scatter.png" format="png" /> |
| 66 </outputs> | 66 </outputs> |
| 67 <tests> | 67 <tests> |
| 68 <test> | 68 <test> |
| 69 <repeat name="input_files"> | 69 <repeat name="input_files"> |
| 70 <param name="matrix" value="hicCorrectMatrix_result2.npz.h5" ftype="h5"/> | 70 <param name="matrix" value="hicCorrectMatrix_result1.npz.h5" ftype="h5"/> |
| 71 <param name="mlabel" value="first"/> | 71 <param name="mlabel" value="first"/> |
| 72 </repeat> | 72 </repeat> |
| 73 <repeat name="input_files"> | 73 <repeat name="input_files"> |
| 74 <param name="matrix" value="hicCorrectMatrix_result2.npz.h5" ftype="h5" /> | 74 <param name="matrix" value="hicCorrectMatrix_result1.npz.h5" ftype="h5" /> |
| 75 <param name="mlabel" value="second"/> | 75 <param name="mlabel" value="second"/> |
| 76 </repeat> | 76 </repeat> |
| 77 <param name="log1p" value="True"/> | 77 <param name="log1p" value="True"/> |
| 78 <param name="colorMap" value="jet"/> | 78 <param name="colormap" value="jet"/> |
| 79 <param name="method" value="spearman"/> | 79 <param name="method" value="spearman"/> |
| 80 <output name="outFileNameHeatmap" file="hicCorrelate_heatmap_result1.png" ftype="png" compare="sim_size"/> | 80 <output name="outFileNameHeatmap" file="hicCorrelate_heatmap_result1.png" ftype="png" compare="sim_size"/> |
| 81 <output name="outFileNameScatter" file="hicCorrelate_scatter_result1.png" ftype="png" compare="sim_size"/> | 81 <output name="outFileNameScatter" file="hicCorrelate_scatter_result1.png" ftype="png" compare="sim_size"/> |
| 82 </test> | 82 </test> |
| 83 </tests> | 83 </tests> |