Mercurial > repos > bgruening > hicexplorer_hiccorrectmatrix
changeset 13:a33c2124979f draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 2307743fd10f0babde52eec30289fe1682236287
| author | iuc |
|---|---|
| date | Sat, 09 Jun 2018 15:02:36 -0400 |
| parents | 27975871546b |
| children | bccd04d7e35d |
| files | hicCorrectMatrix.xml macros.xml test-data/Li_chrX30-35_cool.png test-data/Li_et_al_2015.cool test-data/distVsCounts.txt |
| diffstat | 5 files changed, 64 insertions(+), 2 deletions(-) [+] |
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--- a/hicCorrectMatrix.xml Fri Apr 27 08:32:53 2018 -0400 +++ b/hicCorrectMatrix.xml Sat Jun 09 15:02:36 2018 -0400 @@ -220,7 +220,7 @@ | For more information about HiCExplorer please consider our documentation on readthedocs.io_ .. _readthedocs.io: http://hicexplorer.readthedocs.io/en/latest/index.html -.. _`Imakaev et al. (2012)`: http://doi.org/doi:10.1038/nmeth.2148 +.. _`Imakaev et al. (2012)`: https://doi.org/10.1038/nmeth.2148 ]]></help> <expand macro="citations" /> </tool>
--- a/macros.xml Fri Apr 27 08:32:53 2018 -0400 +++ b/macros.xml Sat Jun 09 15:02:36 2018 -0400 @@ -1,6 +1,6 @@ <macros> <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> - <token name="@WRAPPER_VERSION@">2.1.2</token> + <token name="@WRAPPER_VERSION@">2.1.4</token> <token name="@USE_RANGE@"> #if $use_range.select_use_range == "yes_use_range": --range $range_min:$range_max
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/distVsCounts.txt Sat Jun 09 15:02:36 2018 -0400 @@ -0,0 +1,62 @@ + Chromosome Contacts Distance Matrix +0 all 2.673662429796039 0 small_test_matrix_50kb_res.h5 +1 all 1.6689429928741093 50000 small_test_matrix_50kb_res.h5 +2 all 0.7796660703637448 100000 small_test_matrix_50kb_res.h5 +3 all 0.4811377245508982 150000 small_test_matrix_50kb_res.h5 +4 all 0.3259170174383644 200000 small_test_matrix_50kb_res.h5 +5 all 0.2530193236714976 250000 small_test_matrix_50kb_res.h5 +6 all 0.19278569263413156 300000 small_test_matrix_50kb_res.h5 +7 all 0.1475958612294583 350000 small_test_matrix_50kb_res.h5 +8 all 0.12736713500305435 400000 small_test_matrix_50kb_res.h5 +9 all 0.11737664725712535 450000 small_test_matrix_50kb_res.h5 +10 all 0.09348093480934809 500000 small_test_matrix_50kb_res.h5 +11 all 0.08145634063560629 550000 small_test_matrix_50kb_res.h5 +12 all 0.07492260061919505 600000 small_test_matrix_50kb_res.h5 +13 all 0.06803355079217148 650000 small_test_matrix_50kb_res.h5 +14 all 0.06016209476309227 700000 small_test_matrix_50kb_res.h5 +15 all 0.05411323115420707 750000 small_test_matrix_50kb_res.h5 +16 all 0.0514752040175769 800000 small_test_matrix_50kb_res.h5 +17 all 0.043464566929133856 850000 small_test_matrix_50kb_res.h5 +18 all 0.04835651074589128 900000 small_test_matrix_50kb_res.h5 +19 all 0.04281636536631779 950000 small_test_matrix_50kb_res.h5 +20 all 0.04010184595798854 1000000 small_test_matrix_50kb_res.h5 +21 all 0.034493771957840945 1050000 small_test_matrix_50kb_res.h5 +22 all 0.035256410256410256 1100000 small_test_matrix_50kb_res.h5 +23 all 0.030556449018977163 1150000 small_test_matrix_50kb_res.h5 +24 all 0.027437056165267915 1200000 small_test_matrix_50kb_res.h5 +25 all 0.030774214447683836 1250000 small_test_matrix_50kb_res.h5 +26 all 0.03153446033810143 1300000 small_test_matrix_50kb_res.h5 +27 all 0.026753670473083198 1350000 small_test_matrix_50kb_res.h5 +28 all 0.025867714472822528 1400000 small_test_matrix_50kb_res.h5 +29 all 0.028252299605781867 1450000 small_test_matrix_50kb_res.h5 +30 all 0.025379037574159526 1500000 small_test_matrix_50kb_res.h5 +31 all 0.026124338624338623 1550000 small_test_matrix_50kb_res.h5 +32 all 0.025547445255474453 1600000 small_test_matrix_50kb_res.h5 +33 all 0.0262982689747004 1650000 small_test_matrix_50kb_res.h5 +34 all 0.018036072144288578 1700000 small_test_matrix_50kb_res.h5 +35 all 0.028820375335120642 1750000 small_test_matrix_50kb_res.h5 +36 all 0.024546065904505716 1800000 small_test_matrix_50kb_res.h5 +37 all 0.025303643724696356 1850000 small_test_matrix_50kb_res.h5 +38 all 0.01963439404197698 1900000 small_test_matrix_50kb_res.h5 +39 all 0.020380434782608696 1950000 small_test_matrix_50kb_res.h5 +40 all 0.026244035446489435 2000000 small_test_matrix_50kb_res.h5 +41 all 0.024623803009575923 2050000 small_test_matrix_50kb_res.h5 +42 all 0.024365133836650652 2100000 small_test_matrix_50kb_res.h5 +43 all 0.01928374655647383 2150000 small_test_matrix_50kb_res.h5 +44 all 0.017622667588113337 2200000 small_test_matrix_50kb_res.h5 +45 all 0.015256588072122053 2250000 small_test_matrix_50kb_res.h5 +46 all 0.021224773834377174 2300000 small_test_matrix_50kb_res.h5 +47 all 0.01920391061452514 2350000 small_test_matrix_50kb_res.h5 +48 all 0.014365802382620883 2400000 small_test_matrix_50kb_res.h5 +49 all 0.014416315049226441 2450000 small_test_matrix_50kb_res.h5 +50 all 0.016231474947071278 2500000 small_test_matrix_50kb_res.h5 +51 all 0.013456090651558074 2550000 small_test_matrix_50kb_res.h5 +52 all 0.01492007104795737 2600000 small_test_matrix_50kb_res.h5 +53 all 0.020306376914855716 2650000 small_test_matrix_50kb_res.h5 +54 all 0.013576277241872096 2700000 small_test_matrix_50kb_res.h5 +55 all 0.0146900752418488 2750000 small_test_matrix_50kb_res.h5 +56 all 0.017966223499820338 2800000 small_test_matrix_50kb_res.h5 +57 all 0.017297297297297298 2850000 small_test_matrix_50kb_res.h5 +58 all 0.018070112034694615 2900000 small_test_matrix_50kb_res.h5 +59 all 0.013773106197897789 2950000 small_test_matrix_50kb_res.h5 +60 all 0.01599418393311523 3000000 small_test_matrix_50kb_res.h5