Mercurial > repos > bgruening > hicexplorer_hiccompartmentspolarization

changeset 6:c644b897003a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02
author iuc
date Tue, 10 Jan 2023 17:59:23 +0000
parents 079eac80de1b
children ef889c819984
files hicCompartmentalization.xml macros.xml
diffstat 2 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/hicCompartmentalization.xml	Tue Mar 16 13:53:15 2021 +0000
+++ b/hicCompartmentalization.xml	Tue Jan 10 17:59:23 2023 +0000
@@ -58,18 +58,18 @@
     <tests>
         <test>
             <param name="matrix_h5_cooler_multiple" value="hicTransform/obs_exp_norm.h5" />
-            <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" />
+            <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" ftype="bedgraph" />
             <output name="outFileName" file="hicCompartmentsPolarization/compartmentsPolarizationRatio.png" ftype="png" compare="sim_size" />
         </test>
         <test>
             <param name="matrix_h5_cooler_multiple" value="hicTransform/obs_exp_norm.h5" />
-            <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" />
+            <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" ftype="bedgraph" />
             <param name="quantile" value='30' />
             <output name="outFileName" file="hicCompartmentsPolarization/compartmentsPolarizationRatio.png" ftype="png" compare="sim_size" />
         </test>
         <test>
             <param name="matrix_h5_cooler_multiple" value="hicTransform/obs_exp_norm.h5" />
-            <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" />
+            <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" ftype="bedgraph" />
             <param name="outliers" value='1.0' />
             <output name="outFileName" file="hicCompartmentsPolarization/compartmentsPolarizationRatio.png" ftype="png" compare="sim_size" />
         </test>
--- a/macros.xml	Tue Mar 16 13:53:15 2021 +0000
+++ b/macros.xml	Tue Jan 10 17:59:23 2023 +0000
@@ -1,7 +1,7 @@
 <macros>
     <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token>
     <token name="@TOOL_VERSION@">3.6</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@USE_RANGE@">
         #if $use_range.select_use_range == "yes_use_range":
             --range $use_range.range_min:$use_range.range_max
@@ -333,7 +333,7 @@
         <param name="scaleFactor2" type="float" value="1" label="Scale factor for input" help="(--scaleFactors)" />
     </xml>
     <xml name="xMax">
-        <param argument="--xMax" name="xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" />
+        <param argument="--xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" />
     </xml>
     <xml name="filterThreshold">
         <param argument="--filterThreshold" name="filterThreshold_low" type="float" value="-1.5" label="Remove bins of low coverage" help="e.g. -1.5; Both Thresholds needs to be set to take effect." />