Mercurial > repos > bgruening > glimmer_gene_calling_workflow
changeset 4:fee0a7b3335e draft default tip
Uploaded
author | bgruening |
---|---|
date | Thu, 11 Jul 2013 02:37:22 -0400 |
parents | 4c03eeb47cbb |
children | |
files | glimmer3_with_trainingset.ga readme.rst repository_dependencies.xml |
diffstat | 3 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/glimmer3_with_trainingset.ga Thu Jun 13 09:40:37 2013 -0400 +++ b/glimmer3_with_trainingset.ga Thu Jul 11 02:37:22 2013 -0400 @@ -73,7 +73,7 @@ }, "post_job_actions": {}, "tool_errors": null, - "tool_id": "testtoolshed.g2.bx.psu.edu/repos/bgruening/glimmer/glimmer_build-icm/0.2", + "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/glimmer/glimmer_build-icm/0.2", "tool_state": "{\"__page__\": 0, \"depth\": \"\\\"7\\\"\", \"period\": \"\\\"3\\\"\", \"width\": \"\\\"12\\\"\", \"stop_codon_opts\": \"{\\\"genbank_gencode\\\": \\\"11\\\", \\\"__current_case__\\\": 0, \\\"stop_codon_opts_selector\\\": \\\"gb\\\"}\", \"no_stops\": \"\\\"False\\\"\", \"chromInfo\": \"\\\"/home/bag/projects/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"infile\": \"null\"}", "tool_version": "0.2", "type": "tool", @@ -114,7 +114,7 @@ }, "post_job_actions": {}, "tool_errors": null, - "tool_id": "testtoolshed.g2.bx.psu.edu/repos/bgruening/glimmer/glimmer_knowlegde-based/0.2", + "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/glimmer/glimmer_knowlegde-based/0.2", "tool_state": "{\"extend\": \"\\\"False\\\"\", \"__page__\": 0, \"linear\": \"\\\"True\\\"\", \"detailed_report\": \"\\\"False\\\"\", \"seq_input\": \"null\", \"gc_percent\": \"\\\"0.0\\\"\", \"start_codons\": \"\\\"atg,gtg,ttg\\\"\", \"threshold\": \"\\\"30\\\"\", \"stop_codon_opts\": \"{\\\"genbank_gencode\\\": \\\"11\\\", \\\"__current_case__\\\": 0, \\\"stop_codon_opts_selector\\\": \\\"gb\\\"}\", \"max_olap\": \"\\\"50\\\"\", \"no_indep\": \"\\\"False\\\"\", \"gene_len\": \"\\\"90\\\"\", \"report\": \"\\\"False\\\"\", \"chromInfo\": \"\\\"/home/bag/projects/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"icm_input\": \"null\"}", "tool_version": "0.2", "type": "tool",
--- a/readme.rst Thu Jun 13 09:40:37 2013 -0400 +++ b/readme.rst Thu Jul 11 02:37:22 2013 -0400 @@ -22,7 +22,7 @@ ************ This workflow is available on the main Galaxy Tool Shed: -http://testtoolshed.g2.bx.psu.edu/view/bgruening/glimmer_gene_calling_workflow +http://toolshed.g2.bx.psu.edu/view/bgruening/glimmer_gene_calling_workflow Development is being done here: https://github.com/bgruening/galaxytools/workflows/glimmer3/
--- a/repository_dependencies.xml Thu Jun 13 09:40:37 2013 -0400 +++ b/repository_dependencies.xml Thu Jul 11 02:37:22 2013 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0"?> <repositories description="This requires the glimmer3 repository and the emboss5 tool suite."> <repository changeset_revision="ec5cf10b8db7" name="glimmer" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" /> - <repository changeset_revision="8ddad0c9a75a" name="emboss_5" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="5edd293af092" name="emboss_5" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </repositories>