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1 <tool id="glimmer_orf-to-sequence" name="ORF to Sequence" version="0.1">
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2 <description>assigns ORF to its DNA sequence</description>
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3 <requirements>
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4 <requirement type="package" version="1.61">biopython</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 glimmer_orf_to_seq.py
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8 $glimmer_orfs
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9 $input_fasta
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10 $output
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11 </command>
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12 <inputs>
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13 <param name="input_fasta" type="data" format="fasta" label="Genome Sequence"/>
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14 <param name="glimmer_orfs" type="data" format="tabular" label="Define Glimmer-ORFs"/>
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15 </inputs>
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16 <outputs>
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17 <data name="output" type="data" format="fasta"/>
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18 </outputs>
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19 <tests>
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20 <test>
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21 </test>
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22 </tests>
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23 <help>
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24
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25 **What it does**
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26
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27 This tool extract all gene sequences from a genome, which are predicted with Glimmer3.
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28
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29 </help>
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30 </tool>
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