comparison find_subsequences.xml @ 8:e614ec7a43b8 draft default tip

planemo upload commit caa6f11d80692d7e03f2224f69a535ddd577746e

7:99f356eeba15

<tool id="bg_find_subsequences" name="Nucleotide subsequence search" version="0.2">
    <description>providing regions in BED format</description>
    <requirements>
        <!-- Contains also the Conda dependency, see https://anaconda.org/anaconda/biopython -->
        <requirement type="package" version="1.65">biopython</requirement>
    </requirements>
    <command interpreter="python">
    <![CDATA[
        find_subsequences.py
            --input "${input}"
            --output "${output}"
            --pattern "$pattern_conditional.pattern"
            #if $input.ext == 'fasta':
                --format 'fasta'
            #else:
                --format 'fastq'
            #end if

8:e614ec7a43b8

<tool id="bg_find_subsequences" name="Nucleotide subsequence search" version="0.3">
    <description>providing regions in BED format</description>
    <requirements>
        <requirement type="package" version="1.70">biopython</requirement>
    </requirements>
    <command>
    <![CDATA[
        python '$__tool_directory__/find_subsequences.py'
            --input '${input}'
            --output '${output}'
            --pattern '$pattern_conditional.pattern'
            #if $input.ext == 'fasta':
                --format 'fasta'
            #else:
                --format 'fastq'
            #end if