Mercurial > repos > bgruening > find_subsequences
changeset 8:e614ec7a43b8 draft default tip
planemo upload commit caa6f11d80692d7e03f2224f69a535ddd577746e
| author | bgruening |
|---|---|
| date | Wed, 12 Jul 2017 11:51:17 -0400 |
| parents | 99f356eeba15 |
| children | |
| files | find_subsequences.xml tool_dependencies.xml |
| diffstat | 2 files changed, 7 insertions(+), 14 deletions(-) [+] |
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--- a/find_subsequences.xml Tue Apr 05 15:26:05 2016 -0400 +++ b/find_subsequences.xml Wed Jul 12 11:51:17 2017 -0400 @@ -1,15 +1,14 @@ -<tool id="bg_find_subsequences" name="Nucleotide subsequence search" version="0.2"> +<tool id="bg_find_subsequences" name="Nucleotide subsequence search" version="0.3"> <description>providing regions in BED format</description> <requirements> - <!-- Contains also the Conda dependency, see https://anaconda.org/anaconda/biopython --> - <requirement type="package" version="1.65">biopython</requirement> + <requirement type="package" version="1.70">biopython</requirement> </requirements> - <command interpreter="python"> + <command> <![CDATA[ - find_subsequences.py - --input "${input}" - --output "${output}" - --pattern "$pattern_conditional.pattern" + python '$__tool_directory__/find_subsequences.py' + --input '${input}' + --output '${output}' + --pattern '$pattern_conditional.pattern' #if $input.ext == 'fasta': --format 'fasta' #else:
--- a/tool_dependencies.xml Tue Apr 05 15:26:05 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="biopython" version="1.65"> - <repository changeset_revision="b3a791f6e3ba" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency>