view tool_dependencies.xml @ 1:3b804546d28a draft default tip

Uploaded

<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable action="set_to" name="EXPARNA_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
    </set_environment>
    <package name="vienna_rna" version="1.8.5">
        <repository changeset_revision="18c7086dbb43" name="package_vienna_rna_1_8" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="exparna" version="1.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://www.bioinf.uni-freiburg.de/Software/expaRNA/exparna-1.0.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="18c7086dbb43" name="package_vienna_rna_1_8" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
                        <package name="vienna_rna" version="1.8.5" />
                    </repository>
                </action>
                <action type="shell_command">./configure --prefix $INSTALL_DIR --with-RNA=$ROOT_VIENNA_RNA_DIR</action>
                <action type="make_install" />
                <action type="move_file">
                    <source>create_html.py</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
                
            </actions>
        </install>
        <readme>Compiling ExpaRNA requires a C compiler (typically gcc)</readme>
    </package>
</tool_dependency>