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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 <environment_variable action="set_to" name="EXPARNA_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
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5 </set_environment>
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6 <package name="vienna_rna" version="1.8.5">
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7 <repository changeset_revision="18c7086dbb43" name="package_vienna_rna_1_8" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="exparna" version="1.0">
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10 <install version="1.0">
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11 <actions>
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12 <action type="download_by_url">http://www.bioinf.uni-freiburg.de/Software/expaRNA/exparna-1.0.tar.gz</action>
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13 <action type="set_environment_for_install">
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14 <repository changeset_revision="18c7086dbb43" name="package_vienna_rna_1_8" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
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15 <package name="vienna_rna" version="1.8.5" />
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16 </repository>
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17 </action>
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18 <action type="shell_command">./configure --prefix $INSTALL_DIR --with-RNA=$ROOT_VIENNA_RNA_DIR</action>
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19 <action type="make_install" />
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20 <action type="move_file">
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21 <source>create_html.py</source>
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22 <destination>$INSTALL_DIR</destination>
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23 </action>
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24 <action type="set_environment">
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25 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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26 </action>
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27
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28 </actions>
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29 </install>
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30 <readme>Compiling ExpaRNA requires a C compiler (typically gcc)</readme>
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31 </package>
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32 </tool_dependency>
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