Mercurial > repos > bgruening > erga_ear

comparison test-data/ele_pre.asm2_gfastats.txt @ 0:6af76d4371f8 draft

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planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
author bgruening
date Thu, 04 Jul 2024 12:43:34 +0000
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-1:000000000000 0:6af76d4371f8
1 +++Assembly summary+++:
2 Expected genome size: 3013249396
3 # scaffolds: 555
4 Total scaffold length: 3238925270
5 Average scaffold length: 5835901.39
6 Scaffold N50: 116290662
7 Scaffold auN: 129007713.10
8 Scaffold L50: 10
9 Scaffold NG50: 125802197
10 Scaffold auNG: 138669684.14
11 Scaffold LG50: 9
12 Largest scaffold: 240286497
13 Smallest scaffold: 5000
14 # contigs: 632
15 Total contig length: 3235415746
16 Average contig length: 5119328.71
17 Contig N50: 88190939
18 Contig auN: 98728369.04
19 Contig L50: 12
20 Contig NG50: 88213608
21 Contig auNG: 106007594.40
22 Contig LG50: 11
23 Largest contig: 234471621
24 Smallest contig: 1506
25 # gaps in scaffolds: 77
26 Total gap length in scaffolds: 3509524
27 Average gap length in scaffolds: 45578.23
28 Gap N50 in scaffolds: 1893595
29 Gap auN in scaffolds: 1109381.96
30 Gap L50 in scaffolds: 1
31 Largest gap in scaffolds: 1893595
32 Smallest gap in scaffolds: 13
33 Base composition (A:C:G:T): 950023619:669435937:665265498:950690692
34 GC content %: 41.25
35 # soft-masked bases: 0
36 # segments: 632
37 Total segment length: 3235415746
38 Average segment length: 5119328.71
39 # gaps: 77
40 # paths: 555
41 Scaffold N10: 234471621
42 Scaffold N20: 209119963
43 Scaffold N30: 164853315
44 Scaffold N40: 134179787
45 Scaffold N50: 116290662
46 Scaffold N60: 93312721
47 Scaffold N70: 84883371
48 Scaffold N80: 80300231
49 Scaffold N90: 65267526
50 Scaffold N100: 5000
51 Scaffold L10: 2
52 Scaffold L20: 3
53 Scaffold L30: 5
54 Scaffold L40: 7
55 Scaffold L50: 10
56 Scaffold L60: 13
57 Scaffold L70: 17
58 Scaffold L80: 21
59 Scaffold L90: 25
60 Scaffold L100: 555
61 Scaffold NG10: 234471621
62 Scaffold NG20: 209119963
63 Scaffold NG30: 164853315
64 Scaffold NG40: 134179787
65 Scaffold NG50: 125802197
66 Scaffold NG60: 96796698
67 Scaffold NG70: 85267550
68 Scaffold NG80: 82835581
69 Scaffold NG90: 79589986
70 Scaffold NG100: 37243292
71 Scaffold LG10: 2
72 Scaffold LG20: 3
73 Scaffold LG30: 5
74 Scaffold LG40: 7
75 Scaffold LG50: 9
76 Scaffold LG60: 12
77 Scaffold LG70: 15
78 Scaffold LG80: 18
79 Scaffold LG90: 22
80 Scaffold LG100: 27
81 Contig N10: 204044015
82 Contig N20: 160573602
83 Contig N30: 122210704
84 Contig N40: 116110962
85 Contig N50: 88190939
86 Contig N60: 72901558
87 Contig N70: 47659775
88 Contig N80: 35818318
89 Contig N90: 20408791
90 Contig N100: 1506
91 Contig L10: 2
92 Contig L20: 4
93 Contig L30: 6
94 Contig L40: 9
95 Contig L50: 12
96 Contig L60: 16
97 Contig L70: 21
98 Contig L80: 30
99 Contig L90: 40
100 Contig L100: 632
101 Contig NG10: 204044015
102 Contig NG20: 164853315
103 Contig NG30: 122210704
104 Contig NG40: 116290662
105 Contig NG50: 88213608
106 Contig NG60: 77872504
107 Contig NG70: 58969899
108 Contig NG80: 40048101
109 Contig NG90: 34729504
110 Contig NG100: 6573539
111 Contig LG10: 2
112 Contig LG20: 3
113 Contig LG30: 6
114 Contig LG40: 8
115 Contig LG50: 11
116 Contig LG60: 14
117 Contig LG70: 19
118 Contig LG80: 25
119 Contig LG90: 33
120 Contig LG100: 49
121 Gap N10: 1893595
122 Gap N20: 1893595
123 Gap N30: 1893595
124 Gap N40: 1893595
125 Gap N50: 1893595
126 Gap N60: 323721
127 Gap N70: 312502
128 Gap N80: 146315
129 Gap N90: 99478
130 Gap N100: 13
131 Gap L10: 1
132 Gap L20: 1
133 Gap L30: 1
134 Gap L40: 1
135 Gap L50: 1
136 Gap L60: 2
137 Gap L70: 3
138 Gap L80: 5
139 Gap L90: 8
140 Gap L100: 77