diff test-data/ele_pre.asm2_gfastats.txt @ 0:6af76d4371f8 draft

planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ele_pre.asm2_gfastats.txt	Thu Jul 04 12:43:34 2024 +0000
@@ -0,0 +1,140 @@
++++Assembly summary+++: 
+Expected genome size: 3013249396
+# scaffolds: 555
+Total scaffold length: 3238925270
+Average scaffold length: 5835901.39
+Scaffold N50: 116290662
+Scaffold auN: 129007713.10
+Scaffold L50: 10
+Scaffold NG50: 125802197
+Scaffold auNG: 138669684.14
+Scaffold LG50: 9
+Largest scaffold: 240286497
+Smallest scaffold: 5000
+# contigs: 632
+Total contig length: 3235415746
+Average contig length: 5119328.71
+Contig N50: 88190939
+Contig auN: 98728369.04
+Contig L50: 12
+Contig NG50: 88213608
+Contig auNG: 106007594.40
+Contig LG50: 11
+Largest contig: 234471621
+Smallest contig: 1506
+# gaps in scaffolds: 77
+Total gap length in scaffolds: 3509524
+Average gap length in scaffolds: 45578.23
+Gap N50 in scaffolds: 1893595
+Gap auN in scaffolds: 1109381.96
+Gap L50 in scaffolds: 1
+Largest gap in scaffolds: 1893595
+Smallest gap in scaffolds: 13
+Base composition (A:C:G:T): 950023619:669435937:665265498:950690692
+GC content %: 41.25
+# soft-masked bases: 0
+# segments: 632
+Total segment length: 3235415746
+Average segment length: 5119328.71
+# gaps: 77
+# paths: 555
+Scaffold N10: 234471621
+Scaffold N20: 209119963
+Scaffold N30: 164853315
+Scaffold N40: 134179787
+Scaffold N50: 116290662
+Scaffold N60: 93312721
+Scaffold N70: 84883371
+Scaffold N80: 80300231
+Scaffold N90: 65267526
+Scaffold N100: 5000
+Scaffold L10: 2
+Scaffold L20: 3
+Scaffold L30: 5
+Scaffold L40: 7
+Scaffold L50: 10
+Scaffold L60: 13
+Scaffold L70: 17
+Scaffold L80: 21
+Scaffold L90: 25
+Scaffold L100: 555
+Scaffold NG10: 234471621
+Scaffold NG20: 209119963
+Scaffold NG30: 164853315
+Scaffold NG40: 134179787
+Scaffold NG50: 125802197
+Scaffold NG60: 96796698
+Scaffold NG70: 85267550
+Scaffold NG80: 82835581
+Scaffold NG90: 79589986
+Scaffold NG100: 37243292
+Scaffold LG10: 2
+Scaffold LG20: 3
+Scaffold LG30: 5
+Scaffold LG40: 7
+Scaffold LG50: 9
+Scaffold LG60: 12
+Scaffold LG70: 15
+Scaffold LG80: 18
+Scaffold LG90: 22
+Scaffold LG100: 27
+Contig N10: 204044015
+Contig N20: 160573602
+Contig N30: 122210704
+Contig N40: 116110962
+Contig N50: 88190939
+Contig N60: 72901558
+Contig N70: 47659775
+Contig N80: 35818318
+Contig N90: 20408791
+Contig N100: 1506
+Contig L10: 2
+Contig L20: 4
+Contig L30: 6
+Contig L40: 9
+Contig L50: 12
+Contig L60: 16
+Contig L70: 21
+Contig L80: 30
+Contig L90: 40
+Contig L100: 632
+Contig NG10: 204044015
+Contig NG20: 164853315
+Contig NG30: 122210704
+Contig NG40: 116290662
+Contig NG50: 88213608
+Contig NG60: 77872504
+Contig NG70: 58969899
+Contig NG80: 40048101
+Contig NG90: 34729504
+Contig NG100: 6573539
+Contig LG10: 2
+Contig LG20: 3
+Contig LG30: 6
+Contig LG40: 8
+Contig LG50: 11
+Contig LG60: 14
+Contig LG70: 19
+Contig LG80: 25
+Contig LG90: 33
+Contig LG100: 49
+Gap N10: 1893595
+Gap N20: 1893595
+Gap N30: 1893595
+Gap N40: 1893595
+Gap N50: 1893595
+Gap N60: 323721
+Gap N70: 312502
+Gap N80: 146315
+Gap N90: 99478
+Gap N100: 13
+Gap L10: 1
+Gap L20: 1
+Gap L30: 1
+Gap L40: 1
+Gap L50: 1
+Gap L60: 2
+Gap L70: 3
+Gap L80: 5
+Gap L90: 8
+Gap L100: 77