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comparison test-data/ele.asm1_post_gfastats.txt @ 0:6af76d4371f8 draft

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planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
author bgruening
date Thu, 04 Jul 2024 12:43:34 +0000
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-1:000000000000 0:6af76d4371f8
1 +++Assembly summary+++:
2 Expected genome size: 3013249396
3 # scaffolds: 104
4 Total scaffold length: 3343225297
5 Average scaffold length: 32146397.09
6 Scaffold N50: 125437426
7 Scaffold auN: 138197339.10
8 Scaffold L50: 10
9 Scaffold NG50: 134090202
10 Scaffold auNG: 153331098.53
11 Scaffold LG50: 8
12 Largest scaffold: 243324329
13 Smallest scaffold: 1
14 # contigs: 178
15 Total contig length: 3343086611
16 Average contig length: 18781385.46
17 Contig N50: 77716104
18 Contig auN: 88503007.28
19 Contig L50: 14
20 Contig NG50: 82586413
21 Contig auNG: 98190750.18
22 Contig LG50: 12
23 Largest contig: 204998129
24 Smallest contig: 1
25 # gaps in scaffolds: 74
26 Total gap length in scaffolds: 138686
27 Average gap length in scaffolds: 1874.14
28 Gap N50 in scaffolds: 20675
29 Gap auN in scaffolds: 21797.93
30 Gap L50 in scaffolds: 3
31 Largest gap in scaffolds: 35997
32 Smallest gap in scaffolds: 13
33 Base composition (A:C:G:T): 984620926:687490164:686059446:984916075
34 GC content %: 41.09
35 # soft-masked bases: 0
36 # segments: 178
37 Total segment length: 3343086611
38 Average segment length: 18781385.46
39 # gaps: 74
40 # paths: 104
41 Scaffold N10: 236160408
42 Scaffold N20: 219377424
43 Scaffold N30: 180681480
44 Scaffold N40: 141551058
45 Scaffold N50: 125437426
46 Scaffold N60: 109107485
47 Scaffold N70: 87052876
48 Scaffold N80: 82406000
49 Scaffold N90: 73275821
50 Scaffold N100: 1
51 Scaffold L10: 2
52 Scaffold L20: 3
53 Scaffold L30: 5
54 Scaffold L40: 7
55 Scaffold L50: 10
56 Scaffold L60: 13
57 Scaffold L70: 16
58 Scaffold L80: 20
59 Scaffold L90: 24
60 Scaffold L100: 104
61 Scaffold NG10: 236160408
62 Scaffold NG20: 219377424
63 Scaffold NG30: 180681480
64 Scaffold NG40: 164477691
65 Scaffold NG50: 134090202
66 Scaffold NG60: 117534258
67 Scaffold NG70: 96585471
68 Scaffold NG80: 86756607
69 Scaffold NG90: 82406000
70 Scaffold NG100: 73275821
71 Scaffold LG10: 2
72 Scaffold LG20: 3
73 Scaffold LG30: 5
74 Scaffold LG40: 6
75 Scaffold LG50: 8
76 Scaffold LG60: 11
77 Scaffold LG70: 14
78 Scaffold LG80: 17
79 Scaffold LG90: 20
80 Scaffold LG100: 24
81 Contig N10: 177989186
82 Contig N20: 141551058
83 Contig N30: 119595178
84 Contig N40: 88304850
85 Contig N50: 77716104
86 Contig N60: 64897926
87 Contig N70: 50766403
88 Contig N80: 38082545
89 Contig N90: 19324751
90 Contig N100: 1
91 Contig L10: 2
92 Contig L20: 4
93 Contig L30: 7
94 Contig L40: 10
95 Contig L50: 14
96 Contig L60: 19
97 Contig L70: 25
98 Contig L80: 32
99 Contig L90: 43
100 Contig L100: 178
101 Contig NG10: 177989186
102 Contig NG20: 141551058
103 Contig NG30: 120144288
104 Contig NG40: 89132339
105 Contig NG50: 82586413
106 Contig NG60: 73275821
107 Contig NG70: 63623994
108 Contig NG80: 49644639
109 Contig NG90: 36506007
110 Contig NG100: 19324751
111 Contig LG10: 2
112 Contig LG20: 4
113 Contig LG30: 6
114 Contig LG40: 9
115 Contig LG50: 12
116 Contig LG60: 16
117 Contig LG70: 21
118 Contig LG80: 26
119 Contig LG90: 33
120 Contig LG100: 43
121 Gap N10: 35997
122 Gap N20: 35997
123 Gap N30: 26979
124 Gap N40: 26979
125 Gap N50: 20675
126 Gap N60: 20675
127 Gap N70: 17285
128 Gap N80: 14311
129 Gap N90: 2591
130 Gap N100: 13
131 Gap L10: 1
132 Gap L20: 1
133 Gap L30: 2
134 Gap L40: 2
135 Gap L50: 3
136 Gap L60: 3
137 Gap L70: 4
138 Gap L80: 5
139 Gap L90: 7
140 Gap L100: 74