diff test-data/ele.asm1_post_gfastats.txt @ 0:6af76d4371f8 draft

planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ele.asm1_post_gfastats.txt	Thu Jul 04 12:43:34 2024 +0000
@@ -0,0 +1,140 @@
++++Assembly summary+++: 
+Expected genome size: 3013249396
+# scaffolds: 104
+Total scaffold length: 3343225297
+Average scaffold length: 32146397.09
+Scaffold N50: 125437426
+Scaffold auN: 138197339.10
+Scaffold L50: 10
+Scaffold NG50: 134090202
+Scaffold auNG: 153331098.53
+Scaffold LG50: 8
+Largest scaffold: 243324329
+Smallest scaffold: 1
+# contigs: 178
+Total contig length: 3343086611
+Average contig length: 18781385.46
+Contig N50: 77716104
+Contig auN: 88503007.28
+Contig L50: 14
+Contig NG50: 82586413
+Contig auNG: 98190750.18
+Contig LG50: 12
+Largest contig: 204998129
+Smallest contig: 1
+# gaps in scaffolds: 74
+Total gap length in scaffolds: 138686
+Average gap length in scaffolds: 1874.14
+Gap N50 in scaffolds: 20675
+Gap auN in scaffolds: 21797.93
+Gap L50 in scaffolds: 3
+Largest gap in scaffolds: 35997
+Smallest gap in scaffolds: 13
+Base composition (A:C:G:T): 984620926:687490164:686059446:984916075
+GC content %: 41.09
+# soft-masked bases: 0
+# segments: 178
+Total segment length: 3343086611
+Average segment length: 18781385.46
+# gaps: 74
+# paths: 104
+Scaffold N10: 236160408
+Scaffold N20: 219377424
+Scaffold N30: 180681480
+Scaffold N40: 141551058
+Scaffold N50: 125437426
+Scaffold N60: 109107485
+Scaffold N70: 87052876
+Scaffold N80: 82406000
+Scaffold N90: 73275821
+Scaffold N100: 1
+Scaffold L10: 2
+Scaffold L20: 3
+Scaffold L30: 5
+Scaffold L40: 7
+Scaffold L50: 10
+Scaffold L60: 13
+Scaffold L70: 16
+Scaffold L80: 20
+Scaffold L90: 24
+Scaffold L100: 104
+Scaffold NG10: 236160408
+Scaffold NG20: 219377424
+Scaffold NG30: 180681480
+Scaffold NG40: 164477691
+Scaffold NG50: 134090202
+Scaffold NG60: 117534258
+Scaffold NG70: 96585471
+Scaffold NG80: 86756607
+Scaffold NG90: 82406000
+Scaffold NG100: 73275821
+Scaffold LG10: 2
+Scaffold LG20: 3
+Scaffold LG30: 5
+Scaffold LG40: 6
+Scaffold LG50: 8
+Scaffold LG60: 11
+Scaffold LG70: 14
+Scaffold LG80: 17
+Scaffold LG90: 20
+Scaffold LG100: 24
+Contig N10: 177989186
+Contig N20: 141551058
+Contig N30: 119595178
+Contig N40: 88304850
+Contig N50: 77716104
+Contig N60: 64897926
+Contig N70: 50766403
+Contig N80: 38082545
+Contig N90: 19324751
+Contig N100: 1
+Contig L10: 2
+Contig L20: 4
+Contig L30: 7
+Contig L40: 10
+Contig L50: 14
+Contig L60: 19
+Contig L70: 25
+Contig L80: 32
+Contig L90: 43
+Contig L100: 178
+Contig NG10: 177989186
+Contig NG20: 141551058
+Contig NG30: 120144288
+Contig NG40: 89132339
+Contig NG50: 82586413
+Contig NG60: 73275821
+Contig NG70: 63623994
+Contig NG80: 49644639
+Contig NG90: 36506007
+Contig NG100: 19324751
+Contig LG10: 2
+Contig LG20: 4
+Contig LG30: 6
+Contig LG40: 9
+Contig LG50: 12
+Contig LG60: 16
+Contig LG70: 21
+Contig LG80: 26
+Contig LG90: 33
+Contig LG100: 43
+Gap N10: 35997
+Gap N20: 35997
+Gap N30: 26979
+Gap N40: 26979
+Gap N50: 20675
+Gap N60: 20675
+Gap N70: 17285
+Gap N80: 14311
+Gap N90: 2591
+Gap N100: 13
+Gap L10: 1
+Gap L20: 1
+Gap L30: 2
+Gap L40: 2
+Gap L50: 3
+Gap L60: 3
+Gap L70: 4
+Gap L80: 5
+Gap L90: 7
+Gap L100: 74