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annotate test-data/ele_pre.asm2_gfastats.txt @ 1:82450f7907ef draft

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planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e293d14e82a903a4cab64dd72dfa3f3798466176
author bgruening
date Fri, 30 Aug 2024 09:27:17 +0000
parents 6af76d4371f8
children
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0
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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1 +++Assembly summary+++:
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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2 Expected genome size: 3013249396
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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3 # scaffolds: 555
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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4 Total scaffold length: 3238925270
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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5 Average scaffold length: 5835901.39
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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6 Scaffold N50: 116290662
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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7 Scaffold auN: 129007713.10
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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8 Scaffold L50: 10
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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9 Scaffold NG50: 125802197
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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10 Scaffold auNG: 138669684.14
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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11 Scaffold LG50: 9
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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12 Largest scaffold: 240286497
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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13 Smallest scaffold: 5000
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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14 # contigs: 632
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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15 Total contig length: 3235415746
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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16 Average contig length: 5119328.71
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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17 Contig N50: 88190939
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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18 Contig auN: 98728369.04
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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19 Contig L50: 12
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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20 Contig NG50: 88213608
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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21 Contig auNG: 106007594.40
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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22 Contig LG50: 11
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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23 Largest contig: 234471621
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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24 Smallest contig: 1506
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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25 # gaps in scaffolds: 77
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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26 Total gap length in scaffolds: 3509524
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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27 Average gap length in scaffolds: 45578.23
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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28 Gap N50 in scaffolds: 1893595
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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29 Gap auN in scaffolds: 1109381.96
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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30 Gap L50 in scaffolds: 1
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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31 Largest gap in scaffolds: 1893595
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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32 Smallest gap in scaffolds: 13
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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33 Base composition (A:C:G:T): 950023619:669435937:665265498:950690692
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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34 GC content %: 41.25
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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35 # soft-masked bases: 0
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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36 # segments: 632
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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37 Total segment length: 3235415746
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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38 Average segment length: 5119328.71
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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39 # gaps: 77
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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40 # paths: 555
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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41 Scaffold N10: 234471621
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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42 Scaffold N20: 209119963
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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43 Scaffold N30: 164853315
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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44 Scaffold N40: 134179787
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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45 Scaffold N50: 116290662
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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46 Scaffold N60: 93312721
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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47 Scaffold N70: 84883371
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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48 Scaffold N80: 80300231
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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49 Scaffold N90: 65267526
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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50 Scaffold N100: 5000
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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51 Scaffold L10: 2
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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52 Scaffold L20: 3
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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53 Scaffold L30: 5
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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54 Scaffold L40: 7
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55 Scaffold L50: 10
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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56 Scaffold L60: 13
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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57 Scaffold L70: 17
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58 Scaffold L80: 21
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59 Scaffold L90: 25
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60 Scaffold L100: 555
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61 Scaffold NG10: 234471621
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62 Scaffold NG20: 209119963
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63 Scaffold NG30: 164853315
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64 Scaffold NG40: 134179787
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65 Scaffold NG50: 125802197
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66 Scaffold NG60: 96796698
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67 Scaffold NG70: 85267550
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68 Scaffold NG80: 82835581
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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69 Scaffold NG90: 79589986
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70 Scaffold NG100: 37243292
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71 Scaffold LG10: 2
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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72 Scaffold LG20: 3
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73 Scaffold LG30: 5
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74 Scaffold LG40: 7
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75 Scaffold LG50: 9
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76 Scaffold LG60: 12
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77 Scaffold LG70: 15
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78 Scaffold LG80: 18
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79 Scaffold LG90: 22
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80 Scaffold LG100: 27
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81 Contig N10: 204044015
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82 Contig N20: 160573602
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83 Contig N30: 122210704
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84 Contig N40: 116110962
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85 Contig N50: 88190939
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86 Contig N60: 72901558
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87 Contig N70: 47659775
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88 Contig N80: 35818318
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89 Contig N90: 20408791
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90 Contig N100: 1506
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91 Contig L10: 2
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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92 Contig L20: 4
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93 Contig L30: 6
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94 Contig L40: 9
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95 Contig L50: 12
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96 Contig L60: 16
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97 Contig L70: 21
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98 Contig L80: 30
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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99 Contig L90: 40
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
diff changeset
100 Contig L100: 632
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
diff changeset
101 Contig NG10: 204044015
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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102 Contig NG20: 164853315
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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103 Contig NG30: 122210704
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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104 Contig NG40: 116290662
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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105 Contig NG50: 88213608
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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106 Contig NG60: 77872504
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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107 Contig NG70: 58969899
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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108 Contig NG80: 40048101
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
diff changeset
109 Contig NG90: 34729504
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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110 Contig NG100: 6573539
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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111 Contig LG10: 2
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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112 Contig LG20: 3
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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113 Contig LG30: 6
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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114 Contig LG40: 8
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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115 Contig LG50: 11
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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116 Contig LG60: 14
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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117 Contig LG70: 19
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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118 Contig LG80: 25
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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119 Contig LG90: 33
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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120 Contig LG100: 49
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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121 Gap N10: 1893595
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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122 Gap N20: 1893595
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
diff changeset
123 Gap N30: 1893595
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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124 Gap N40: 1893595
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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125 Gap N50: 1893595
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
diff changeset
126 Gap N60: 323721
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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127 Gap N70: 312502
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
diff changeset
128 Gap N80: 146315
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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129 Gap N90: 99478
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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130 Gap N100: 13
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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131 Gap L10: 1
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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132 Gap L20: 1
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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133 Gap L30: 1
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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134 Gap L40: 1
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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135 Gap L50: 1
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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136 Gap L60: 2
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
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137 Gap L70: 3
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
diff changeset
138 Gap L80: 5
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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parents:
diff changeset
139 Gap L90: 8
6af76d4371f8 planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit a08f73e00550020ac83f4d45045075962a8a2251
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140 Gap L100: 77