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view annotate_pan_genome.sh @ 0:340b6c0d4324 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edta commit 24cb0421330e54b144b3e6f1be4ae35ac0e48c1c
author bgruening
date Sun, 16 Oct 2022 12:40:30 +0000 (2022-10-16)
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#!/usr/bin/env bash

lib=NAM.EDTA1.8.0.MTEC02052020.TElib.fa
genome=($1)

RepeatMasker -pa 36 -q -div 40 -lib $lib -cutoff 225 -gff $genome