Mercurial > repos > bgruening > edta

diff annotate_pan_genome.sh @ 0:340b6c0d4324 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edta commit 24cb0421330e54b144b3e6f1be4ae35ac0e48c1c
author bgruening
date Sun, 16 Oct 2022 12:40:30 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/annotate_pan_genome.sh	Sun Oct 16 12:40:30 2022 +0000
@@ -0,0 +1,6 @@
+#!/usr/bin/env bash
+
+lib=NAM.EDTA1.8.0.MTEC02052020.TElib.fa
+genome=($1)
+
+RepeatMasker -pa 36 -q -div 40 -lib $lib -cutoff 225 -gff $genome
\ No newline at end of file