Mercurial > repos > bgruening > diffbind

changeset 1:0753d019a353 draft

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Uploaded
author bgruening
date Mon, 13 Jan 2014 17:58:55 -0500
parents 8d48d5591389
children 0c7207440cf0
files diffbind.xml tool_dependencies.xml
diffstat 2 files changed, 2 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/diffbind.xml	Mon Jan 13 17:20:14 2014 -0500
+++ b/diffbind.xml	Mon Jan 13 17:58:55 2014 -0500
@@ -8,7 +8,6 @@
         <requirement type="package" version="2.13">diffbind</requirement>
     </requirements>
     <command interpreter="Rscript">
-        #import simplejson
         diffbind.R
             -i $infile
             -o $outfile
@@ -58,7 +57,6 @@
         </configfile>
     </configfiles>
     <outputs>
-    <outputs>
         <data format="bed" name="outfile" label="Differential binding sites on ${on_string}">
             <change_format>
                 <when input="format" value="wig" format="wig" />
--- a/tool_dependencies.xml	Mon Jan 13 17:20:14 2014 -0500
+++ b/tool_dependencies.xml	Mon Jan 13 17:58:55 2014 -0500
@@ -1,10 +1,10 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="R_3_0_1" version="3.0.1">
-        <repository changeset_revision="0a395bcd7efd" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="0a395bcd7efd" name="package_r_3_0_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="deseq2" version="1.0.17">
-        <repository changeset_revision="3b6a8c377895" name="package_deseq2_1_0_17" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="3b6a8c377895" name="package_deseq2_1_0_17" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
 
     <package name="diffbind" version="2.13">