view tool_dependencies.xml @ 1:0753d019a353 draft

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<?xml version="1.0"?>
<tool_dependency>
    <package name="R_3_0_1" version="3.0.1">
        <repository changeset_revision="0a395bcd7efd" name="package_r_3_0_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="deseq2" version="1.0.17">
        <repository changeset_revision="3b6a8c377895" name="package_deseq2_1_0_17" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>

    <package name="diffbind" version="2.13">
        <install version="1.0">
            <actions>
                <action type="setup_r_environment">

                    <repository changeset_revision="0a395bcd7efd" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                        <package name="R_3_0_1" version="3.0.1" />
                    </repository>

                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/BiocGenerics_0.8.0.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/XVector_0.2.0.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/limma_3.18.9.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gtools_3.1.1.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gdata_2.13.2.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/caTools_1.16.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Biostrings_2.30.1.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/bitops_1.0-6.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/GenomicRanges_1.14.4.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/RColorBrewer_1.0-5.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/amap_0.8-7.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/edgeR_3.4.2.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gplots_2.12.1.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/IRanges_1.20.6.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/zlibbioc_1.8.0.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Rsamtools_1.14.2.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/DiffBind_1.8.3.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/XML_3.98-1.1.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/BSgenome_1.30.0.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/RCurl_1.95-4.1.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/rtracklayer_1.22.0.tar.gz</package>

                </action>
            </actions>
        </install>
        <readme>
        Differential Binding Analysis of ChIP-Seq peak data
        http://www.bioconductor.org/packages/release/bioc/html/DiffBind.html
        </readme>
    </package>
</tool_dependency>