Mercurial > repos > bgruening > diamond

changeset 4:e1326442d13f draft

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Uploaded
author bgruening
date Sat, 07 Feb 2015 14:49:26 -0500
parents e6ce730fbba6
children 47b17961c436
files datatypes_conf.xml diamand.xml diamand_makedb.xml
diffstat 3 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/datatypes_conf.xml	Sat Feb 07 14:32:02 2015 -0500
+++ b/datatypes_conf.xml	Sat Feb 07 14:49:26 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <datatypes>
     <registration>
-        <datatype extension="diamond_database" type="galaxy.datatypes.binary:CompressedArchive" subclass="True" display_in_upload="False"/>
+        <datatype extension="diamond_database" type="galaxy.datatypes.binary:Binary" subclass="True" display_in_upload="False"/>
     </registration>
 </datatypes>
--- a/diamand.xml	Sat Feb 07 14:32:02 2015 -0500
+++ b/diamand.xml	Sat Feb 07 14:49:26 2015 -0500
@@ -67,7 +67,7 @@
             </param>
           </when>  <!-- build-in -->
           <when value="history">
-            <param name="reference_database" type="data" format="compressed_archive" label="Select the reference database" />
+            <param name="reference_database" type="data" format="diamond_database" label="Select the reference database" />
           </when>  <!-- history -->
         </conditional>
 
@@ -139,7 +139,7 @@
         <test>
             <param name="method" value="blastp"/>
             <param name="query" value="protein.fasta" ftype="fasta"/>
-            <param name="reference_database" value="diamond_makedb_result1.dmnd" ftype="compressed_archive"/>
+            <param name="reference_database" value="diamond_makedb_result1.dmnd" ftype="diamond_database"/>
             <param name="db_source" value="history"/>
             <output name="blast_output" file="diamond_result1.tabular" ftpye="tabular"/>
         </test>
--- a/diamand_makedb.xml	Sat Feb 07 14:32:02 2015 -0500
+++ b/diamand_makedb.xml	Sat Feb 07 14:49:26 2015 -0500
@@ -19,12 +19,12 @@
     </inputs>
 
     <outputs>
-        <data format="compressed_archive" name="outfile" label="Diamond database ${on_string}"/>
+        <data format="diamond_database" name="outfile" label="Diamond database ${on_string}"/>
     </outputs>
     <tests>
         <test>
             <param name="infile" value="protein.fasta" ftype="fasta"/>
-            <output name="outfile" file="diamond_makedb_result1.dmnd" ftpye="compressed_archive"/>
+            <output name="outfile" file="diamond_makedb_result1.dmnd" ftpye="diamond_database"/>
         </test>
     </tests>
     <help>