Mercurial > repos > bgruening > diamond
comparison diamand.xml @ 4:e1326442d13f draft
Uploaded
| author | bgruening |
|---|---|
| date | Sat, 07 Feb 2015 14:49:26 -0500 |
| parents | 09a565cfc192 |
| children |
comparison
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| 3:e6ce730fbba6 | 4:e1326442d13f |
|---|---|
| 65 <validator type="no_options" message="No indexes are available for the selected input dataset"/> | 65 <validator type="no_options" message="No indexes are available for the selected input dataset"/> |
| 66 </options> | 66 </options> |
| 67 </param> | 67 </param> |
| 68 </when> <!-- build-in --> | 68 </when> <!-- build-in --> |
| 69 <when value="history"> | 69 <when value="history"> |
| 70 <param name="reference_database" type="data" format="compressed_archive" label="Select the reference database" /> | 70 <param name="reference_database" type="data" format="diamond_database" label="Select the reference database" /> |
| 71 </when> <!-- history --> | 71 </when> <!-- history --> |
| 72 </conditional> | 72 </conditional> |
| 73 | 73 |
| 74 <conditional name="method"> | 74 <conditional name="method"> |
| 75 <param name="method_select" type="select" label="What do you want to align" help="(--blastp/--blastx)"> | 75 <param name="method_select" type="select" label="What do you want to align" help="(--blastp/--blastx)"> |
| 137 </outputs> | 137 </outputs> |
| 138 <tests> | 138 <tests> |
| 139 <test> | 139 <test> |
| 140 <param name="method" value="blastp"/> | 140 <param name="method" value="blastp"/> |
| 141 <param name="query" value="protein.fasta" ftype="fasta"/> | 141 <param name="query" value="protein.fasta" ftype="fasta"/> |
| 142 <param name="reference_database" value="diamond_makedb_result1.dmnd" ftype="compressed_archive"/> | 142 <param name="reference_database" value="diamond_makedb_result1.dmnd" ftype="diamond_database"/> |
| 143 <param name="db_source" value="history"/> | 143 <param name="db_source" value="history"/> |
| 144 <output name="blast_output" file="diamond_result1.tabular" ftpye="tabular"/> | 144 <output name="blast_output" file="diamond_result1.tabular" ftpye="tabular"/> |
| 145 </test> | 145 </test> |
| 146 </tests> | 146 </tests> |
| 147 <help> | 147 <help> |