Mercurial > repos > bgruening > deseq2

changeset 21:d32de046ba31 draft

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Uploaded
author bgruening
date Wed, 19 Feb 2014 12:43:03 -0500 (2014-02-19)
parents bbea9c694b34
children aad8927093ac
files deseq2.xml foldchanges_heatmap.xml tool_dependencies.xml
diffstat 3 files changed, 7 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/deseq2.xml	Wed Feb 19 06:11:20 2014 -0500
+++ b/deseq2.xml	Wed Feb 19 12:43:03 2014 -0500
@@ -3,8 +3,8 @@
     <requirements>
         <requirement type="binary">Rscript</requirement>
         <requirement type="R-module">DESeq2</requirement>
-        <requirement type="package" version="3.0.1">R_3_0_1</requirement>
-        <requirement type="package" version="1.0.17">deseq2</requirement>
+        <requirement type="package" version="3.0.2">R_3_0_2</requirement>
+        <requirement type="package" version="1.2.10">deseq2</requirement>
         <!--<requirement type="set_environment">DESEQ2_SCRIPT_PATH</requirement>-->
     </requirements>
     <command interpreter="Rscript">
--- a/foldchanges_heatmap.xml	Wed Feb 19 06:11:20 2014 -0500
+++ b/foldchanges_heatmap.xml	Wed Feb 19 12:43:03 2014 -0500
@@ -2,6 +2,7 @@
     <description>Plot heat map of fold changes from multiple DESeq2 outputs</description>
     <requirements>
         <requirement type="binary">Rscript</requirement>
+        <requirement type="package" version="3.0.2">R_3_0_2</requirement>
     </requirements>
     <command interpreter="Rscript">
             #set $label_list = list()
--- a/tool_dependencies.xml	Wed Feb 19 06:11:20 2014 -0500
+++ b/tool_dependencies.xml	Wed Feb 19 12:43:03 2014 -0500
@@ -1,12 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="R_3_0_1" version="3.0.1">
-        <repository changeset_revision="4666f68ad4d5" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    <package name="R_3_0_2" version="3.0.2">
+        <repository changeset_revision="9aac33c71188" name="package_r_3_0_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="deseq2" version="1.0.17">
-        <repository changeset_revision="3b6a8c377895" name="package_deseq2_1_0_17" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    <package name="deseq2" version="1.2.10">
+        <repository changeset_revision="43ec8420b239" name="package_deseq2_1_2_10" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <!--<set_environment version="1.0">
-        <environment_variable name="DESEQ2_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR/scripts</environment_variable>
-    </set_environment>-->
 </tool_dependency>