Mercurial > repos > bgruening > deseq2
changeset 27:05a4f4e317a0 draft
Uploaded
| author | bgruening |
|---|---|
| date | Wed, 26 Nov 2014 12:16:47 -0500 |
| parents | bac4ebab1122 |
| children | 6947d8ed51cc |
| files | deseq2.xml test-data/deseq2_out.tab test-data/deseq2_out_filtered.tab test-data/deseq_out.tab test-data/deseq_out_filtered.tab |
| diffstat | 5 files changed, 44517 insertions(+), 44507 deletions(-) [+] |
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--- a/deseq2.xml Wed Nov 26 12:06:14 2014 -0500 +++ b/deseq2.xml Wed Nov 26 12:16:47 2014 -0500 @@ -103,7 +103,11 @@ <param name="factorLevel" value="Treated"/> <repeat name="rep_countsFile"> <param name="countsFile" value="GSM461179_treat_single.counts"/> + </repeat> + <repeat name="rep_countsFile"> <param name="countsFile" value="GSM461180_treat_paired.counts"/> + </repeat> + <repeat name="rep_countsFile"> <param name="countsFile" value="GSM461181_treat_paired.counts"/> </repeat> </repeat> @@ -111,14 +115,20 @@ <param name="factorLevel" value="Untreated"/> <repeat name="rep_countsFile"> <param name="countsFile" value="GSM461176_untreat_single.counts"/> + </repeat> + <repeat name="rep_countsFile"> <param name="countsFile" value="GSM461177_untreat_paired.counts"/> + </repeat> + <repeat name="rep_countsFile"> <param name="countsFile" value="GSM461178_untreat_paired.counts"/> + </repeat> + <repeat name="rep_countsFile"> <param name="countsFile" value="GSM461182_untreat_single.counts"/> </repeat> </repeat> </repeat> <output name="deseq_out" file="deseq2_out.tab"/> - <output name="deseq_out_filtered" file="deseq_out_filtered.tab"/> + <output name="deseq_out_filtered" file="deseq2_out_filtered.tab"/> </test> </tests>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/deseq2_out.tab Wed Nov 26 12:16:47 2014 -0500 @@ -0,0 +1,29738 @@ +FBgn0003360 1926.15153148367 -2.91148171217375 0.130336714183315 -22.338154912198 1.57411961922225e-110 1.27377759587464e-106 +FBgn0039155 325.459536227471 -3.66220137362026 0.176088398508895 -20.7975165009821 4.5580685037446e-96 1.84419451661506e-92 +FBgn0029167 1645.06838721232 -2.15355232123139 0.113991414127923 -18.8922326975841 1.32137063489959e-79 3.56417705920248e-76 +FBgn0025111 654.899504825618 2.58816865334459 0.148065018425739 17.4799468562026 2.03688798657961e-68 4.12062439685055e-65 +FBgn0035085 266.612376768001 -2.25454744149754 0.151388030320573 -14.8925079263097 3.68676640343055e-50 5.96666274731201e-47 +FBgn0029896 211.064156078333 -2.130827435218 0.152599031785136 -13.9635711333888 2.60069032888373e-44 3.50746435688786e-41 +FBgn0039827 99.4958203154698 -2.81310829363397 0.212232945105171 -13.2548143844489 4.23162599004568e-40 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