Mercurial > repos > bgruening > deeptools_plot_pca

annotate plotPCA.xml @ 7:4bd03b1a8da7 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit ae00542731230245927953207977833a0f020b69
author bgruening
date Wed, 23 Dec 2015 07:33:16 -0500
parents 1f9a7501bd38
children c74dd623b281
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1 <tool id="deeptools_plot_pca" name="plotPCA" version="@WRAPPER_VERSION@.0">
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2 <description>generating a principal component analysis (PCA) plot from bamCorrelate or bigwigCorrelate output</description>
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3 <macros>
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4 <token name="@BINARY@">plotPCA</token>
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5 <import>deepTools_macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <command>
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9 <![CDATA[
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10 @BINARY@
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11 --corData "$corData"
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12 --plotTitle "$plotTitle"
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13 --plotFile "$outFileName"
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14 --plotFileFormat "$outFileFormat"
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15 ]]>
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16 </command>
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17 <inputs>
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18 <param name="corData" format="deeptools_coverage_matrix" type="data" label="Matrix file from the bamCorrelate tool"/>
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19 <expand macro="input_image_file_format" />
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20 <expand macro="plotTitle" />
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21 </inputs>
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22 <outputs>
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23 <expand macro="output_image_file_format_not_nested" />
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24 </outputs>
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25 <tests>
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26 <test>
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27 <param name="corData" value="bamCorrelate_result2.npz" ftype="deeptools_coverage_matrix" />
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28 <param name="plotTitle" value="Test Plot" />
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29 <param name="outFileFormat" value="png" />
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30 <output name="outFileName" file="plotPCA_result1.png" ftpye="png" compare="sim_size" delta="100" />
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31 </test>
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32 </tests>
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33 <help>
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34 <![CDATA[
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35
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36 **What it does**
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37
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38 Tool for generating a principal component analysis (PCA)
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39 plot from bamCorrelate or bigwigCorrelate output.
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41 -----
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43 @REFERENCES@
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44 ]]>
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45 </help>
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46 <expand macro="citations" />
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47 </tool>