Mercurial > repos > bgruening > deeptools_plot_pca
diff plotPCA.xml @ 0:a6fdea25d41f draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
author | bgruening |
---|---|
date | Wed, 16 Dec 2015 16:41:08 -0500 |
parents | |
children | 1f9a7501bd38 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/plotPCA.xml Wed Dec 16 16:41:08 2015 -0500 @@ -0,0 +1,47 @@ +<tool id="deeptools_plot_pca" name="plotPCA" version="@WRAPPER_VERSION@.0"> + <description>generating a principal component analysis (PCA) plot from bamCorrelate or bigwigCorrelate output</description> + <macros> + <token name="@BINARY@">plotPCA</token> + <import>deepTools_macros.xml</import> + </macros> + <expand macro="requirements"/> + <command> +<![CDATA[ + @BINARY@ + --corData "$corData" + --plotTitle "$plotTitle" + --plotFile "$outFileName" + --plotFileFormat "$outFileFormat" +]]> + </command> + <inputs> + <param name="corData" format="deeptools_coverage_matrix" type="data" label="Matrix file from the bamCorrelate tool"/> + <expand macro="image_file_format" /> + <expand macro="plotTitle" /> + </inputs> + <outputs> + <expand macro="output_image_file_format" /> + </outputs> + <tests> + <test> + <param name="corData" value="bamCorrelate_result2.npz" ftype="deeptools_coverage_matrix" /> + <param name="plotTitle" value="Test Plot" /> + <param name="outFileFormat" value="png" /> + <output name="outFileName" file="plotPCA_result1.png" compare="sim_size" delta="100" /> + </test> + </tests> + <help> +<![CDATA[ + +**What it does** + +Tool for generating a principal component analysis (PCA) +plot from bamCorrelate or bigwigCorrelate output. + +----- + +@REFERENCES@ +]]> + </help> + <expand macro="citations" /> +</tool>