Mercurial > repos > bgruening > deeptools_multi_bigwig_summary
annotate deepTools_macros.xml @ 13:fa6cd160faf3 draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit beb75870e99ed8ceca69753bf7de546877b3e2ff
author | bgruening |
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date | Fri, 12 Aug 2016 05:13:11 -0400 |
parents | e9d7ac6f8e20 |
children | 7414b8b48dae |
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ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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1 <macros> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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2 |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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3 <xml name="advancedOpt_scaffold"> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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4 <conditional name="advancedOpt"> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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5 <param name="showAdvancedOpt" type="select" label="Show advanced options" > |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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6 <option value="no" selected="true">no</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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7 <option value="yes">yes</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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8 </param> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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9 <when value="no" /> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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10 <when value="yes"> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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11 <yield/> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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12 </when> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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13 </conditional> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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14 </xml> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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15 |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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16 <token name="@ADVANCED_OPTS_READ_PROCESSING@"> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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17 #if $advancedOpt.doExtendCustom.doExtend == 'custom': |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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18 --extendReads $advancedOpt.doExtendCustom.extendReadsValue |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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19 #else if $advancedOpt.doExtendCustom.doExtend == 'yes': |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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20 --extendReads |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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21 #end if |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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22 $advancedOpt.ignoreDuplicates |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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23 $advancedOpt.centerReads |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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24 #if $advancedOpt.minMappingQuality: |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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25 --minMappingQuality '$advancedOpt.minMappingQuality' |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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26 #end if |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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27 #if $advancedOpt.samFlagInclude: |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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28 --samFlagInclude $advancedOpt.samFlagInclude |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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29 #end if |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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30 #if $advancedOpt.samFlagExclude: |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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31 --samFlagExclude $advancedOpt.samFlagExclude |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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32 #end if |
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e9d7ac6f8e20
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
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33 #if $advancedOpt.minFragmentLength: |
e9d7ac6f8e20
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
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34 --minFragmentLength $advancedOpt.minFragmentLength |
e9d7ac6f8e20
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
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35 #end if |
e9d7ac6f8e20
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
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36 #if $advancedOpt.maxFragmentLength: |
e9d7ac6f8e20
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
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37 --maxFragmentLength $advancedOpt.maxFragmentLength |
e9d7ac6f8e20
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
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38 #end if |
e9d7ac6f8e20
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
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39 </token> |
e9d7ac6f8e20
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
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40 |
e9d7ac6f8e20
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
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41 <token name="@ADVANCED_OPTS_GTF@"> |
e9d7ac6f8e20
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
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42 $advancedOpt.metagene |
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43 #if $advancedOpt.transcriptID: |
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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
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44 --transcriptID $advancedOpt.transcriptID |
e9d7ac6f8e20
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45 #end if |
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46 #if $advancedOpt.exonID: |
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47 --exonID $advancedOpt.exonID |
e9d7ac6f8e20
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48 #end if |
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49 #if $advancedOpt.transcript_id_designator: |
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50 --transcript_id_designator $advancedOpt.transcript_id_designator |
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51 #end if |
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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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52 </token> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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53 |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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54 <xml name="heatmap_options"> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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55 <expand macro="zMin_zMax" /> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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56 <expand macro="colorMap" /> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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57 <expand macro="plotTitle" /> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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58 <expand macro="plotNumbers" /> |
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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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59 </xml> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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60 |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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61 <token name="@HEATMAP_OPTIONS@"> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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62 #if str($plotting_type.zMin) != "": |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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63 --zMin $plotting_type.zMin |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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64 #end if |
ca581d3634d1
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65 #if str($plotting_type.zMax) != "": |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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66 --zMax $plotting_type.zMax |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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67 #end if |
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68 --colorMap '$plotting_type.colorMap' |
ca581d3634d1
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69 $plotting_type.plotNumbers |
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70 --plotTitle '$plotting_type.plotTitle' |
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71 </token> |
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72 |
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73 |
ca581d3634d1
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74 <xml name="includeZeros"> |
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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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75 <param argument="--includeZeros" type="boolean" truevalue="--includeZeros" falsevalue="" |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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76 label="Include zeros" |
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77 help="If set, then regions with zero counts for *all* BAM files are included. The default behavior is to ignore such regions." /> |
ca581d3634d1
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78 </xml> |
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79 |
ca581d3634d1
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80 <xml name="zMin_zMax"> |
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81 <param argument="--zMin" type="text" value="" optional="true" label="Minimum value for the heatmap intensities" |
0
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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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82 help="If not specified the value is set automatically."/> |
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83 <param argument="--zMax" type="text" value="" optional="true" label="Maximum value for the heatmap intensities" |
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84 help="If not specified the value is set automatically."/> |
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85 </xml> |
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86 |
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87 <xml name="region_limit_operation"> |
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88 <param argument="--region" type="text" value="" |
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89 label="Region of the genome to limit the operation to" |
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90 help="This is useful when testing parameters to reduce the time required. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"."> |
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91 <sanitizer> |
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92 <valid initial="string.letters,string.digits"> |
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93 <add value="|"/> |
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94 </valid> |
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95 </sanitizer> |
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96 </param> |
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97 </xml> |
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98 |
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99 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> |
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100 <token name="@WRAPPER_VERSION@">2.3.3</token> |
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101 <xml name="requirements"> |
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102 <requirements> |
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103 <requirement type="package" version="2.7.10">python</requirement> |
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104 <requirement type="package" version="2.3.3">deepTools</requirement> |
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105 <yield /> |
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106 </requirements> |
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107 <expand macro="stdio" /> |
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108 <version_command>@BINARY@ --version</version_command> |
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109 </xml> |
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110 |
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111 <xml name="smoothLength"> |
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112 <param argument="--smoothLength" type="integer" value="" optional="True" min="1" |
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113 label="Smooth values using the following length (in bases)" |
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114 help ="The smooth length defines a window, larger than the bin size, over which the number of reads is to be averaged. For example, if the bin size is set to 20 and the smooth length is 60, then, for each bin, its value is set to the average of it and its left and right neighbors. Any value smaller than the bin size will be ignored and no smoothing will be applied."/> |
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115 </xml> |
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116 |
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117 |
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118 <xml name="kmeans_clustering"> |
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119 <conditional name="used_multiple_regions"> |
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120 <param name="used_multiple_regions_options" type="select" |
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121 label="Did you compute the matrix with more than one groups of regions?" |
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122 help="Would you like to cluster the regions according to the similarity of the signal distribution? This is only possible if you used computeMatrix on only one group of regions."> |
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123 <option value="yes">Yes, I used multiple groups of regions</option> |
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124 <option value="no">No, I used only one group</option> |
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125 </param> |
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126 <when value="no"> |
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127 <conditional name="clustering"> |
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128 <param name="clustering_options" type="select" label="Clustering algorithm"> |
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129 <option value="none">No clustering</option> |
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130 <option value="kmeans">Kmeans clustering</option> |
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131 <option value="hclust">Hierarchical clustering</option> |
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132 </param> |
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133 <when value="kmeans"> |
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134 <param name="k_kmeans" type="integer" value="0" label="Number of clusters to compute" |
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135 help="When this option is set, the matrix is split into clusters using the k-means algorithm. |
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136 This only works for data that is not grouped, otherwise only the first group will be clustered. |
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137 If more specific clustering methods are required it is advisable to save the underlying matrix and |
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138 run the clustering using other software."/> |
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139 </when> |
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140 <when value="hclust"> |
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141 <param name="n_hclust" type="integer" value="0" label="number of clusters to compute." |
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142 help="WARNING: This option causes the tool to run for a very long time! When this option is |
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143 set, the matrix is split into clusters using the hierarchical clustering algorithm, using ward linkage. |
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144 This only works for data that is not grouped, otherwise only the first group will be clustered. |
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145 Note that you must have used the '--missingDataAsZero' option within computeMatrix! |
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146 If more specific clustering methods are required it is advisable to save the underlying matrix and |
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147 run the clustering using other software."/> |
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148 </when> |
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149 <when value="none" /> |
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150 </conditional> |
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151 </when> |
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152 <when value="yes" /> |
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153 </conditional> |
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154 </xml> |
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155 |
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156 <token name="@KMEANS_CLUSTERING@"> |
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157 #if $advancedOpt.used_multiple_regions.used_multiple_regions_options == 'no': |
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158 #if $advancedOpt.used_multiple_regions.clustering.clustering_options == 'kmeans': |
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159 #if int($advancedOpt.used_multiple_regions.clustering.k_kmeans) > 0: |
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160 --kmeans $advancedOpt.used_multiple_regions.clustering.k_kmeans |
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161 #end if |
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162 #end if |
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163 #if $advancedOpt.used_multiple_regions.clustering.clustering_options == 'hclust': |
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164 #if int($advancedOpt.used_multiple_regions.clustering.n_hclust) > 0: |
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165 --hclust $advancedOpt.used_multiple_regions.clustering.n_hclust |
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166 #end if |
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167 #end if |
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168 #end if |
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169 </token> |
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170 |
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171 <xml name="samFlags"> |
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172 <param argument="--samFlagInclude" type="integer" optional="True" value="" |
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173 label="Include reads based on the SAM flag" |
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174 help= "For example, to get only reads that are the first mate use a flag of 64. This is useful to count properly paired reads only once, otherwise the second mate will be also considered for the coverage."/> |
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175 <param argument="--samFlagExclude" type="integer" optional="True" value="" |
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176 label="Exclude reads based on the SAM flag" |
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177 help= "For example, to get only reads that map to the forward strand, use --samFlagExclude 16, where 16 is the SAM flag for reads that map to the reverse strand."/> |
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178 </xml> |
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179 |
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180 <xml name="fragLength"> |
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181 <param argument="--minFragmentLength" type="integer" optional="True" value="0" min="0" |
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182 label="Minimum fragment length for inclusion." |
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183 help="A value greater than 0 will filter out ALL single-end reads. This is primarily useful in things like ATACseq, where one would like to look specifically at mono- or di-nucleosome fragments." /> |
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184 <param argument="--maxFragmentLength" type="integer" optional="True" value="0" min="0" |
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185 label="Maximum fragment length for inclusion." |
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186 help="As above, but the maximum length. A value of 0 (the default) is equivalent to no maximum." /> |
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187 </xml> |
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188 |
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189 <xml name="read_processing_options"> |
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190 <expand macro="extendReads" /> |
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191 <expand macro="ignoreDuplicates" /> |
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192 <expand macro="centerReads" /> |
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193 <expand macro="minMappingQuality" /> |
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194 <expand macro="samFlags" /> |
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195 <expand macro="fragLength" /> |
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196 </xml> |
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197 |
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198 <xml name="gtf_options"> |
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199 <param argument="--metagene" type="boolean" truevalue="--boolean" falsevalue="" |
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200 label="Use a metagene model" |
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201 help="If set and a BED12 or GTF file or files is used to provide regions, only exons will be used. This is convenient for looking at coverage over mature mRNA transcripts or similar uses where introns should be ignored." /> |
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202 <param argument="--transcriptID" optional="True" value="transcript" type="text" |
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203 label="trascript designator" |
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204 help="When a GTF file is used to provide regions, only entries with this value as their feature (column 2) will be processed as transcripts. Default: transcript" /> |
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205 <param argument="--exonID" optional="True" value="exon" type="text" |
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206 label="exon designator" |
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207 help="When a GTF file is used to provide regions, only entries with this value as their feature (column 2) will be processed as exons. CDS would be another common value for this. Default: exon" /> |
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208 <param argument="--transcript_id_designator" optional="True" value="transcript_id" type="text" |
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209 label="transcriptID key designator" |
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210 help="Each region has an ID (e.g., ACTB) assigned to it, which for BED files is either column 4 (if it exists) |
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211 or the interval bounds. For GTF files this is instead stored in the last column as a key:value pair (e.g., |
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212 as 'transcript_id ACTB', for a key of transcript_id and a value of ACTB). In some cases it can be |
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213 convenient to use a different identifier. To do so, set this to the desired key. Default: transcript_id" /> |
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214 </xml> |
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215 |
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216 |
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217 <xml name="plotNumbers"> |
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218 <param argument="--plotNumbers" type="boolean" truevalue="--plotNumbers" falsevalue="" |
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219 label="Plot the correlation value" |
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220 help="If set, then the correlation number is plotted on top of the heatmap."/> |
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221 </xml> |
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222 |
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223 <xml name="extendReads"> |
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224 <conditional name="doExtendCustom"> |
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225 <param name="doExtend" type="select" label="Extend reads to the given average fragment size." |
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226 help="(1) Single-end reads and singletons are extended to match this length. (2) Paired-end reads are extended to match the fragment size, regardless of what is set here. |
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227 By default *each* read mate is extended. |
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228 This can be modified using the SAM flags (see --samFlagInclude and --samFlagExclude options) to keep only the first or the second mate. |
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229 Unmated reads, mate reads that map to different chromosomes or too far apart are extended to the given value. |
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230 Reads are only extended if --extendReads is set to a value greater than the read length. *NOTE*: For spliced-read data, this option is not |
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231 recommended as it will extend reads over skipped regions, e.g. introns in RNA-seq data."> |
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232 <option value="no" selected="True">No extension. The default value and most typically appropriate.</option> |
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233 <option value="yes">Paired-end extension. Suitable only for paired-end datasets.</option> |
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234 <option value="custom">A custom length, which will be applied to ALL reads.</option> |
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235 </param> |
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236 <when value="no" /> |
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237 <when value="yes" /> |
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238 <when value="custom"> |
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239 <param name="extendReadsValue" type="integer" value="300" min="1" |
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240 label="Extend reads to the given average fragment size" |
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241 help="Extend all reads to this length" /> |
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242 </when> |
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243 </conditional> |
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244 </xml> |
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245 |
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246 <xml name="corMethod"> |
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247 <param argument="--corMethod" type="select" label="Correlation method"> |
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248 <option value="spearman" selected="True">Spearman</option> |
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249 <option value="pearson">Pearson</option> |
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250 </param> |
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251 </xml> |
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252 |
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253 <xml name="distanceBetweenBins"> |
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254 <param argument="--distanceBetweenBins" type="integer" value="0" min="0" |
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255 label="Distance between bins" |
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256 help="By default, multiBamSummary considers consecutive bins of |
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257 the specified 'Bin size'. However, to reduce the |
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258 computation time, a larger distance between bins can |
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259 be given. Larger distances result in fewer bins being |
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260 considered."/> |
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261 </xml> |
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262 |
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263 <xml name="centerReads"> |
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264 <param argument="--centerReads" type="boolean" truevalue="--centerReads" falsevalue="" |
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265 label="Center regions with respect to the fragment length" |
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266 help="For paired-end data the fragment is defined by the bounds of the reads. For single-end data the bounds are defined by the read and the user-definable fragment/extension length. This option is useful to get a sharper signal around enriched regions."/> |
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267 </xml> |
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268 |
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269 <xml name="ignoreDuplicates"> |
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270 <param argument="--ignoreDuplicates" type="boolean" truevalue="--ignoreDuplicates" falsevalue="" |
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271 label="Ignore duplicates" |
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272 help="If set, reads that have the same orientation and start position will be considered only once. If reads are paired, the mate position also has to coincide to ignore a read." /> |
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273 </xml> |
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274 |
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275 <xml name="sortUsing"> |
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276 <param argument="--sortUsing" type="select" label="Method used for sorting" |
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277 help="For each row the method is computed."> |
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278 <option value="mean" selected="true">mean</option> |
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279 <option value="median">median</option> |
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280 <option value="min">min</option> |
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281 <option value="max">max</option> |
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282 <option value="sum">sum</option> |
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283 <option value="region_length">region length</option> |
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284 </param> |
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285 </xml> |
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286 |
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287 <xml name="sortRegions"> |
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288 <param argument="--sortRegions" type="select" label="Sort regions" |
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289 help="Whether the heatmap should present the regions sorted. The default is to sort in descending order based on the mean value per region."> |
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290 <option value="no">no ordering</option> |
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291 <option value="descend" selected="true">descending order</option> |
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292 <option value="ascend">ascending order</option> |
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293 </param> |
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294 </xml> |
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295 |
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296 <xml name="minMappingQuality"> |
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297 <param argument="--minMappingQuality" type="integer" optional="true" value="1" min="0" |
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298 label="Minimum mapping quality" |
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299 help= "If set, only reads with a mapping quality score higher than this value are considered."/> |
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300 </xml> |
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301 |
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302 <xml name="skipZeros"> |
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303 <param argument="--skipZeros" type="boolean" truevalue="--skipZeros" falsevalue="" |
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304 label ="Skip zeros" |
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305 help ="If set, then zero counts that happen for *all* BAM files given are ignored. This may result in fewer considered regions." /> |
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306 </xml> |
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307 |
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308 <xml name="fragmentLength"> |
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309 <param argument="--fragmentLength" type="integer" value="300" min="1" |
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310 label="Fragment length used for the sequencing" |
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311 help ="If paired-end reads are used, the fragment length is computed from the BAM file, so this is only needed for single-end data."/> |
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312 </xml> |
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313 |
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314 <xml name="scaleFactor"> |
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315 <param argument="--scaleFactor" type="float" value="1" label="Scaling factor" |
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316 help="When used in combination with --normalizeTo1x or |
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317 --normalizeUsingRPKM, the computed scaling factor will |
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318 be multiplied by the given scale factor." /> |
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319 </xml> |
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320 |
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321 <xml name="scaleFactors"> |
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322 <param name="scaleFactor1" type="float" value="1" label="Scale factor for treatment" help="(--scaleFactors)"/> |
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323 <param name="scaleFactor2" type="float" value="1" label="Scale factor for input" help="(--scaleFactors)"/> |
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324 </xml> |
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325 |
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326 <xml name="stdio"> |
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327 <stdio> |
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328 <exit_code range="1:" /> |
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329 <exit_code range=":-1" /> |
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330 <regex match="Error:" /> |
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331 <regex match="Exception:" /> |
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332 <regex match="EXception:" /> |
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333 <regex match="Traceback" /> |
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334 </stdio> |
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335 </xml> |
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336 |
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337 <xml name="pseudocount"> |
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338 <param argument="--pseudocount" type="float" value="1" label="Pseudocount" help="Small number to avoid dividing by zero."/> |
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339 </xml> |
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340 |
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341 <token name="@REFERENCES@"> |
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342 |
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343 .. class:: infomark |
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344 |
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345 For more information on the tools, please visit our `help site`_. |
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346 |
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347 If you would like to give us feedback or you run into any trouble, please send an email to deeptools@googlegroups.com |
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348 |
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349 This tool is developed by the `Bioinformatics and Deep-Sequencing Unit`_ at the `Max Planck Institute for Immunobiology and Epigenetics`_. |
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350 |
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351 .. _Bioinformatics and Deep-Sequencing Unit: http://www.ie-freiburg.mpg.de/bioinformaticsfac |
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352 .. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de |
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353 .. _help site: https://deeptools.readthedocs.org/ |
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354 |
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355 </token> |
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356 <xml name="citations"> |
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357 <citations> |
10
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358 <citation type="doi">10.1093/nar/gkw257</citation> |
0
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359 <yield /> |
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360 </citations> |
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361 </xml> |
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362 |
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363 <xml name="multiple_input_bams"> |
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364 <param argument="--bamfiles" type="data" format="bam" min="1" |
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365 label="Bam file" multiple="true" |
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366 help=""/> |
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367 </xml> |
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368 |
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369 <xml name="multiple_input_bams_min2"> |
0
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370 <param argument="--bamfiles" type="data" format="bam" min="2" |
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371 label="Bam file" multiple="true" |
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372 help=""/> |
0
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373 </xml> |
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374 |
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375 <xml name="multiple_input_bigwigs"> |
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376 <param argument="--bigwigfiles" type="data" format="bigwig" multiple="True" min="2" |
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377 label="Bigwig file" |
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378 help="A Bigwig file."/> |
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379 </xml> |
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380 |
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381 <xml name="plotTitle"> |
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382 <param argument="--plotTitle" type="text" value="" size="30" optional="True" |
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383 label="Title of the plot" |
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384 help="Title of the plot, to be printed on top of the generated image." /> |
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385 </xml> |
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386 |
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387 |
0
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388 <token name="@multiple_input_bams@"> |
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389 <![CDATA[ |
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390 #set files=[] |
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391 #set labels=[] |
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392 #for $counter, $bamfile in enumerate($bamfiles): |
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393 ln -s "${bamfile}" "./${counter}.bam" && |
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394 ln -s "${bamfile.metadata.bam_index}" "./${counter}.bam.bai" && |
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395 #silent $files.append('%s.bam' % $counter) |
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396 #silent $labels.append("'%s'" % ($bamfile.display_name)) |
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397 #end for |
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398 ]]> |
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399 </token> |
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400 |
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401 <token name="@multiple_input_bigwigs@"> |
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402 <![CDATA[ |
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403 #set files=[] |
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404 #set labels=[] |
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405 #for $counter, $bigwig in enumerate($bigwigfiles): |
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406 ln -s "${bigwig}" "${counter}.bw" && |
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407 #silent $files.append('%s.bw' % $counter) |
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408 #silent $labels.append("'%s'" % ($bigwig.display_name)) |
0
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409 #end for |
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410 ]]> |
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411 </token> |
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412 |
12
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413 <xml name="blacklist"> |
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414 <param argument="--blackListFileName" type="data" format="bed,gtf" multiple="true" optional="true" min="0" |
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415 label="Blacklisted regions in BED/GTF format" |
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416 help="One or more files containing regions to exclude from the analysis" /> |
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417 </xml> |
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418 |
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419 <token name="@blacklist@"> |
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420 <![CDATA[ |
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421 #if ' '.join( map(str, $advancedOpt.blackListFileName) ) != 'None': |
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422 #set blfiles=[] |
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423 #for $f in $advancedOpt.blackListFileName: |
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424 #silent $blfiles.append("'%s'" % $f) |
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425 #end for |
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426 #if $blfiles != ["'None'"]: |
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427 --blackListFileName #echo ' '.join($blfiles)# |
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428 #end if |
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429 #end if |
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430 ]]> |
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431 </token> |
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432 |
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433 <xml name="multiple_bed"> |
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434 <param argument="--BED" type="data" format="bed,gtf" min="1" multiple="true" |
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435 label="Regions in BED/GTF format" |
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436 help="One or more files containing regions to include in the analysis" /> |
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437 </xml> |
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438 |
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439 <token name="@multiple_bed@"> |
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440 <![CDATA[ |
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441 #set files=[] |
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442 #set labels=[] |
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443 #for $f in $BED: |
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444 #silent $files.append("'%s'" % $f) |
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445 #silent $labels.append("'%s'" % $f.display_name) |
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446 #end for |
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447 #if len($files) > 0: |
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448 --BED #echo ' '.join($files)# |
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449 --regionLabels #echo ' '.join($labels)# |
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450 #end if |
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451 ]]> |
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452 </token> |
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453 |
0
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454 <xml name="reference_genome_source"> |
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455 <conditional name="source"> |
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456 <param name="ref_source" type="select" label="Reference genome"> |
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457 <option value="cached">locally cached</option> |
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458 <option value="history">in your history</option> |
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459 </param> |
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460 <when value="cached"> |
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461 <param name="input1_2bit" type="select" label="Using reference genome" help="If your genome of interest is not listed, contact the Galaxy team"> |
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462 <options from_data_table="lastz_seqs"> |
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463 <filter type="sort_by" column="1" /> |
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464 <validator type="no_options" message="No indexes are available." /> |
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465 </options> |
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466 </param> |
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467 </when> |
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468 <when value="history"> |
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469 <param name="input1" type="data" format="twobit" label="Select a reference dataset in 2bit format" /> |
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470 </when> |
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471 </conditional> |
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472 </xml> |
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473 |
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474 <token name="@reference_genome_source@"> |
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475 #if $source.ref_source=="history": |
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476 --genome $source.input1 |
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477 #else: |
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478 --genome "$source.input1_2bit.fields.path" |
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479 #end if |
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480 </token> |
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481 |
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482 <xml name="effectiveGenomeSize"> |
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483 <conditional name="effectiveGenomeSize"> |
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484 <param name="effectiveGenomeSize_opt" type="select" label="Effective genome size" |
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485 help="The effective genome size is the portion of the genome that is mappable. Large fractions of the genome are stretches of NNNN that should be discarded. |
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486 Also, if repetitive regions were not included in the mapping of reads, the effective genome size needs to be adjusted accordingly. |
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487 See Table 2 of http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0030377 or http://www.nature.com/nbt/journal/v27/n1/fig_tab/nbt.1518_T1.html for several effective genome sizes."> |
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488 <option value="93260000">ce10 (93260000)</option> |
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489 <option value="121400000">dm3 (121400000)</option> |
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490 <option value="2451960000" selected="true">hg19 (2451960000)</option> |
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491 <option value="2150570000">mm9 (2150570000)</option> |
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492 <option value="specific">user specified</option> |
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493 </param> |
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494 <when value="specific"> |
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495 <param argument="--effectiveGenomeSize" type="integer" value="" label="Effective genome size" |
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496 help="e.g. ce10: 93260000, dm3: 121400000, hg19: 2451960000, mm9: 2150570000"/> |
0
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497 </when> |
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498 <when value="2150570000" /> |
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499 <when value="2451960000" /> |
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500 <when value="121400000" /> |
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501 <when value="93260000" /> |
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502 </conditional> |
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503 </xml> |
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504 |
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505 <xml name="skipNAs"> |
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506 <param argument="--skipNAs" type="boolean" truevalue="--skipNAs" falsevalue="" checked="False" |
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507 label="Ignore missing data?" |
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508 help="This parameter determines if non-covered regions |
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509 (regions without overlapping reads) in a bam/bigWig file |
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510 should be skipped. The default is to treat those |
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511 regions as having a value of zero. The decision to |
ca581d3634d1
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512 skip non-covered regions depends on the interpretation |
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513 of the data. Non-covered regions may represent, for |
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514 example, repetitive regions that should be ignored. |
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515 (default: False)" /> |
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516 </xml> |
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517 |
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518 <xml name="input_save_matrix_values"> |
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519 <param argument="--saveMatrix" type="boolean" label="Save the matrix of values underlying the heatmap"/> |
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520 </xml> |
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521 |
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522 <xml name="input_graphic_output_settings"> |
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523 <conditional name="output" > |
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524 <param name="showOutputSettings" type="select" label="Show advanced output settings" > |
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525 <option value="no" selected="true">no</option> |
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526 <option value="yes">yes</option> |
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527 </param> |
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528 <when value="no" /> |
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529 <when value="yes"> |
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530 <yield /> |
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531 <param name="saveSortedRegions" type="boolean" |
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532 label="Save the regions after skipping zeros or min/max threshold values" |
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533 help="The order of the regions in the file follows the sorting order selected. This is useful, |
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534 for example, to generate other heatmaps keeping the sorting of the first heatmap."/> |
0
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535 </when> |
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536 </conditional> |
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537 </xml> |
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538 |
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539 |
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540 <xml name="input_image_file_format"> |
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541 <param argument="--outFileFormat" type="select" label="Image file format"> |
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542 <option value="png" selected="true">png</option> |
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543 <option value="pdf">pdf</option> |
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544 <option value="svg">svg</option> |
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545 <option value="eps">eps</option> |
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546 </param> |
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547 </xml> |
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548 |
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549 <xml name="output_dpi"> |
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550 <param argument="--dpi" name="dpi" type="integer" value="200" size="3" optional="True" |
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551 label="Image dpi" help=""/> |
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552 </xml> |
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553 |
0
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554 <xml name="output_image_file_format"> |
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555 <data format="png" name="outFileName" label="${tool.name} image"> |
ca581d3634d1
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556 <change_format> |
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557 <when input="output.outFileFormat" value="pdf" format="pdf" /> |
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558 <when input="output.outFileFormat" value="svg" format="svg" /> |
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559 <when input="output.outFileFormat" value="eps" format="eps" /> |
ca581d3634d1
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560 </change_format> |
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|
561 </data> |
ca581d3634d1
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562 </xml> |
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|
563 |
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564 <xml name="output_image_file_format_not_nested"> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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565 <data format="png" name="outFileName" label="${tool.name} image"> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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566 <change_format> |
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567 <when input="outFileFormat" value="pdf" format="pdf" /> |
ca581d3634d1
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568 <when input="outFileFormat" value="svg" format="svg" /> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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569 <when input="outFileFormat" value="eps" format="eps" /> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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parents:
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|
570 </change_format> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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571 </data> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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|
572 </xml> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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parents:
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|
573 |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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|
574 <xml name="output_save_matrix_values"> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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575 <data format="tabular" name="outFileNameMatrix" label="${tool.name} on ${on_string}: Heatmap values"> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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parents:
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576 <filter> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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|
577 (( |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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|
578 output['showOutputSettings'] == 'yes' and |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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579 output['saveMatrix'] is True |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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580 )) |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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parents:
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|
581 </filter> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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582 </data> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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583 </xml> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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584 |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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585 <xml name="output_graphic_outputs"> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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|
586 <data format="bed" name="outFileSortedRegions" label="${tool.name} on ${on_string}: sorted/filtered regions"> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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587 <filter> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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588 (( |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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589 output['showOutputSettings'] == 'yes' and |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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590 output['saveSortedRegions'] is True |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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|
591 )) |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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parents:
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|
592 </filter> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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593 </data> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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594 </xml> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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|
595 |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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596 <xml name="colorMap"> |
12
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597 <param name="colorMap" type="select" label="Color map to use for the heatmap" |
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598 help=" Available color map names can be found here: http://matplotlib.org/examples/color/colormaps_reference.html" |
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599 multiple="true"> |
0
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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600 <option value="RdYlBu" selected="true">RdYlBu</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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changeset
|
601 <option value="Accent">Accent</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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602 <option value="Spectral">Spectral</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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603 <option value="Set1">Set1</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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604 <option value="Set2">Set2</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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605 <option value="Set3">Set3</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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606 <option value="Dark2">Dark2</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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|
607 <option value="Reds">Reds</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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608 <option value="Oranges">Oranges</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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609 <option value="Greens">Greens</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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610 <option value="Blues">Blues</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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611 <option value="Greys">Greys</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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612 <option value="Purples">Purples</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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|
613 <option value="Paired">Paired</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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614 <option value="Pastel1">Pastel1</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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615 <option value="Pastel2">Pastel2</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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616 <option value="spring">spring</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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617 <option value="summer">summer</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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618 <option value="autumn">autumn</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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619 <option value="winter">winter</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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620 <option value="hot">hot</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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621 <option value="coolwarm">coolwarm</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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622 <option value="cool">cool</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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623 <option value="seismic">seismic</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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624 <option value="terrain">terrain</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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625 <option value="ocean">ocean</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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626 <option value="rainbow">rainbow</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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627 <option value="bone">bone</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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628 <option value="flag">flag</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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629 <option value="prism">prism</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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630 <option value="cubehelix">cubehelix</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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631 <option value="binary">binary</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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632 <option value="pink">pink</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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633 <option value="gray">gray</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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634 <option value="copper">copper</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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635 <option value="BrBG">BrBG</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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636 <option value="BuGn">BuGn</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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|
637 <option value="BuPu">BuPu</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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638 <option value="GnBu">GnBu</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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639 <option value="OrRd">OrRd</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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640 <option value="PiYG">PiYG</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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641 <option value="PRGn">PRGn</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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642 <option value="PuOr">PuOr</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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643 <option value="PuRd">PuRd</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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644 <option value="PuBu">PuBu</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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645 <option value="RdBu">RdBu</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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|
646 <option value="RdGy">RdGy</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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647 <option value="RdPu">RdPu</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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648 <option value="YlGn">YlGn</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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649 <option value="PuBuGn">PuBuGn</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
650 <option value="RdYlGn">RdYlGn</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
651 <option value="YlGnBu">YlGnBu</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
652 <option value="YlOrBr">YlOrBr</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
653 <option value="YlOrRd">YlOrRd</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
654 <option value="gist_gray">gist_gray</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
655 <option value="gist_stern">gist_stern</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
656 <option value="gist_earth">gist_earth</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
657 <option value="gist_yarg">gist_yarg</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
658 <option value="gist_ncar">gist_ncar</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
659 <option value="gist_rainbow">gist_rainbow</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
660 <option value="gist_heat">gist_heat</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
661 <option value="gnuplot">gnuplot</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
662 <option value="gnuplot2">gnuplot2</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
663 <option value="CMRmap">CMRmap</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
664 <option value="bwr">bwr</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
665 <option value="hsv">hsv</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
666 <option value="brg">brg</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
667 <option value="jet">jet</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
668 <option value="afmhot">afmhot</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
669 <option value="Accent_r">Accent reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
670 <option value="Spectral_r">Spectral reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
671 <option value="Set1_r">Set1 reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
672 <option value="Set2_r">Set2 reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
673 <option value="Set3_r">Set3 reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
674 <option value="Dark2_r">Dark2 reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
675 <option value="Reds_r">Reds reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
676 <option value="Oranges_r">Oranges reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
677 <option value="Greens_r">Greens reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
678 <option value="Blues_r">Blues reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
679 <option value="Greys_r">Greys reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
680 <option value="Purples_r">Purples reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
681 <option value="Paired_r">Paired reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
682 <option value="Pastel1_r">Pastel1 reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
683 <option value="Pastel2_r">Pastel2 reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
684 <option value="spring_r">spring reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
685 <option value="summer_r">summer reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
686 <option value="autumn_r">autumn reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
687 <option value="winter_r">winter reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
688 <option value="hot_r">hot reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
689 <option value="coolwarm_r">coolwarm reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
690 <option value="cool_r">cool reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
691 <option value="seismic_r">seismic reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
692 <option value="terrain_r">terrain reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
693 <option value="ocean_r">ocean reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
694 <option value="rainbow_r">rainbow reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
695 <option value="bone_r">bone reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
696 <option value="flag_r">flag reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
697 <option value="prism_r">prism reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
698 <option value="cubehelix_r">cubehelix reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
699 <option value="binary_r">binary reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
700 <option value="pink_r">pink reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
701 <option value="gray_r">gray reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
702 <option value="copper_r">copper reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
703 <option value="BrBG_r">BrBG reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
704 <option value="BuGn_r">BuGn reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
705 <option value="BuPu_r">BuPu reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
706 <option value="GnBu_r">GnBu reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
707 <option value="OrRd_r">OrRd reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
708 <option value="PiYG_r">PiYG reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
709 <option value="PRGn_r">PRGn reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
710 <option value="PuOr_r">PuOr reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
711 <option value="PuRd_r">PuRd reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
712 <option value="PuBu_r">PuBu reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
713 <option value="RdBu_r">RdBu reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
714 <option value="RdGy_r">RdGy reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
715 <option value="RdPu_r">RdPu reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
716 <option value="YlGn_r">YlGn reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
717 <option value="PuBuGn_r">PuBuGn reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
718 <option value="RdYlBu_r">RdYlBu reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
719 <option value="RdYlGn_r">RdYlGn reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
720 <option value="YlGnBu_r">YlGnBu reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
721 <option value="YlOrBr_r">YlOrBr reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
722 <option value="YlOrRd_r">YlOrRd reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
723 <option value="gist_gray_r">gist_gray reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
724 <option value="gist_stern_r">gist_stern reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
725 <option value="gist_earth_r">gist_earth reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
726 <option value="gist_yarg_r">gist_yarg reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
727 <option value="gist_ncar_r">gist_ncar reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
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changeset
|
728 <option value="gist_rainbow_r">gist_rainbow reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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parents:
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729 <option value="gist_heat_r">gist_heat reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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parents:
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changeset
|
730 <option value="gnuplot_r">gnuplot reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
731 <option value="gnuplot2_r">gnuplot2 reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
732 <option value="CMRmap_r">CMRmap reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
733 <option value="bwr_r">bwr reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
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changeset
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734 <option value="hsv_r">hsv reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
735 <option value="brg_r">brg reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
736 <option value="jet_r">jet reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
737 <option value="afmhot_r">afmhot reversed</option> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
738 </param> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
739 |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
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changeset
|
740 </xml> |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
diff
changeset
|
741 |
ca581d3634d1
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b'a4965adc865b4c85b35ed205bc10821edc104f20'
bgruening
parents:
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742 </macros> |