Mercurial > repos > bgruening > deeptools_multi_bam_summary

diff multiBamSummary.xml @ 10:024e6f9762af draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
author bgruening
date Thu, 11 Aug 2016 06:28:26 -0400
parents 3c94b764e274
children cd485e0524c2
line wrap: on
line diff
--- a/multiBamSummary.xml	Fri May 13 17:10:22 2016 -0400
+++ b/multiBamSummary.xml	Thu Aug 11 06:28:26 2016 -0400
@@ -36,6 +36,8 @@
 
             #if $advancedOpt.showAdvancedOpt == "yes":
                 @ADVANCED_OPTS_READ_PROCESSING@
+                @ADVANCED_OPTS_GTF@
+                @blacklist@
             #end if
 ]]>
     </command>
@@ -72,6 +74,8 @@
 
         <expand macro="advancedOpt_scaffold">
             <expand macro="read_processing_options" />
+            <expand macro="gtf_options" />
+            <expand macro="blacklist" />
         </expand>
 
         <param argument="--outRawCounts" type="boolean" label="Save raw counts (coverages) to file" help=""/>